View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10030_high_19 (Length: 242)
Name: NF10030_high_19
Description: NF10030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10030_high_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 24561722 - 24561481
Alignment:
| Q |
1 |
agcataggacatagcagcaataaaattcagaggactcaacgctgtaacaaactttgacatgactcgttatgacgtgaaagcaattctcgaaagcaataca |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| |
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| T |
24561722 |
agcatacgacatagcagcaataaaattcagaggactcaacgctgtaacaaactttgacatgactcgttacgacgtgaaagccattctcgaaagcaacaca |
24561623 |
T |
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| Q |
101 |
cttccaatcggaggaggagctgcaaaaagactaaaagaagcacaagctctagaaacttcgagaaaacgcgaagaaatgcttgcactcaactcttcatctt |
200 |
Q |
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| T |
24561622 |
ctgccaattggaggaggagctgcaaaaagactaaaagaagcacaagctctagaaacttcgagaaaacgcgaagaaatgcttgcacttaactcatcatctt |
24561523 |
T |
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| Q |
201 |
tccaatatggaacatcaagctccagtaacactagactccaac |
242 |
Q |
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| T |
24561522 |
tccaatatggaacatcaagctctagtaacactagactccaac |
24561481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 41963849 - 41963684
Alignment:
| Q |
1 |
agcataggacatagcagcaataaaattcagaggactcaacgctgtaacaaactttgacatgactcgttatgacgtgaaagcaattctcgaaagcaataca |
100 |
Q |
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|||||| |||||||| ||||| |||||||||||| | ||||| ||||||||||||||||||| |||||| ||||||||||| ||||| ||||| | || |
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| T |
41963849 |
agcatatgacatagctgcaatcaaattcagaggattaaacgcagtaacaaactttgacatgaatcgttacgacgtgaaagcgattcttgaaagtatcact |
41963750 |
T |
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| Q |
101 |
cttccaatcggaggaggagctgcaaaaagactaaaagaagcacaagctctagaaacttcgagaaaa |
166 |
Q |
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| T |
41963749 |
ctcccaataggaggaggtgctgcaaaaagattaaaagaagcacaagctctagaatcttctagaaaa |
41963684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 30618355 - 30618307
Alignment:
| Q |
14 |
gcagcaataaaattcagaggactcaacgctgtaacaaactttgacatga |
62 |
Q |
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| T |
30618355 |
gcagcaataaaattcagaggactgagtgcagttacaaactttgacatga |
30618307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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