View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10030_high_22 (Length: 205)
Name: NF10030_high_22
Description: NF10030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10030_high_22 |
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| [»] chr4 (5 HSPs) |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 48912125 - 48911921
Alignment:
| Q |
1 |
acactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagt |
100 |
Q |
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||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48912125 |
acactctcttctcctctctcagccttctcttgaatagttctgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagt |
48912026 |
T |
|
| Q |
101 |
gttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggattccgttacttttgaaaactgtctcaagaagcgcttccaacaatttactcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48912025 |
gttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggattccgttacttttgaaaactgtctcaagaagcgcttccaataatttactcag |
48911926 |
T |
|
| Q |
201 |
ctgct |
205 |
Q |
| |
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||||| |
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| T |
48911925 |
ctgct |
48911921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 48962710 - 48962834
Alignment:
| Q |
21 |
tgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccg |
120 |
Q |
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|||||||||||||| | | |||||||||||||| ||||||| ||||||||||| ||||||| || |||||||||||||||||||| ||||||||||| |
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| T |
48962710 |
tgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacccgtggttttctcgtagtgttcgatgcactcttcaccg |
48962809 |
T |
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| Q |
121 |
tcaagttcagcaaaattgttgacaa |
145 |
Q |
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||||||||||| || |||||||||| |
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| T |
48962810 |
tcaagttcagcgaagttgttgacaa |
48962834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 48965726 - 48965887
Alignment:
| Q |
2 |
cactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtg |
101 |
Q |
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||||||||| ||| |||| |||||||||||||| |||| | |||||||||||||||||||||||||||||||| || |||| || | || | || | |
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| T |
48965726 |
cactctcttgtcccctctctgctttctcttgaacagttttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctactcacataata |
48965825 |
T |
|
| Q |
102 |
ttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggattccgttacttttga |
163 |
Q |
| |
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|| || |||||||| |||||||| ||||| ||||||||||||| || ||| |||||||||| |
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| T |
48965826 |
tttaatgtactcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttga |
48965887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 48958566 - 48958671
Alignment:
| Q |
24 |
tttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtca |
123 |
Q |
| |
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|||||||||||| ||| ||||||||||||||| ||||||||||||||| | ||||||| || |||||| |||||||||||| |||||||||| ||| |
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| T |
48958566 |
tttctcttgaatggtttggcgaataagagaagcaggaccaagatgccaaaccttgtgacccgtgattttcttgtagtgttcgatgcactcttcaccatca |
48958665 |
T |
|
| Q |
124 |
agttca |
129 |
Q |
| |
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|||||| |
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| T |
48958666 |
agttca |
48958671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 48951640 - 48951727
Alignment:
| Q |
11 |
ctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgta |
98 |
Q |
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||||||| | ||| ||||||||| ||||| |||||| |||||| || ||||||||||||||||| ||||||| | ||||||||||| |
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| T |
48951640 |
ctcctctatttgccttctcttgagtagttttgcgaacaagagaggccggaccaagatgccaagccttgtgaccgatggttttctcgta |
48951727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 114; Significance: 5e-58; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 6276 - 6087
Alignment:
| Q |
16 |
ctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactctt |
115 |
Q |
| |
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||||||||||| ||||||| |||| | |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
6276 |
ctctgtgctttttcttgaacagttctacgaataagagaagccggaccaagatgccaagctttgtgacctgtagttttctcgtagtgttcgatgtactctt |
6177 |
T |
|
| Q |
116 |
caccgtcaagttcagcaaaattgttgacaaggattccgttacttttgaaaactgtctcaagaagcgcttccaacaatttactcagctgct |
205 |
Q |
| |
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||||||||||||||| ||||||||| |||| ||||||||| ||||||||||| ||||| | |||||||||||| || | ||||| ||||| |
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| T |
6176 |
caccgtcaagttcagaaaaattgttaacaatgattccgttgcttttgaaaaccgtctccaaaagcgcttccaataagtcactcatctgct |
6087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 10275 - 10109
Alignment:
| Q |
1 |
acactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagt |
100 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||| |||| | |||| |||| ||||||||| ||||||||||||||| |||| |||||||||| ||||| |
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| T |
10275 |
acactctgttctcctctctctgttttctcttgaacagttctacgaacaagataagctggactaagatgccaagctttctgacccgtagttttcttgtagt |
10176 |
T |
|
| Q |
101 |
gttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggattccgttacttttgaaaac |
167 |
Q |
| |
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||||||| | || || |||||||||||| ||||||| ||||||||||| || | |||||||||||| |
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| T |
10175 |
gttcgatgtgctatttaccgtcaagttctacaaaattattgacaaggatcccttgacttttgaaaac |
10109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 1242 - 1164
Alignment:
| Q |
4 |
ctctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgac |
82 |
Q |
| |
|
|||| |||||| || | ||||||||||||| | ||| |||||| |||||| ||||| |||||| ||||||| ||||||| |
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| T |
1242 |
ctcttttctcccctatttgctttctcttgagtggttttgcgaacaagagatgctgggccaagaagccaagccttgtgac |
1164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 12589929 - 12589787
Alignment:
| Q |
21 |
tgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccg |
120 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||||| || | |||||| || |
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| T |
12589929 |
tgctttctcttgaacagttttgtgaataagagaagctggaccaagatgccaagccttgtgacctgtggttttctcatagtgtttgacacactcttggcca |
12589830 |
T |
|
| Q |
121 |
tcaagttcagcaaaattgttgacaaggattccgttacttttga |
163 |
Q |
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||||||||||| || ||||| |||| || ||| |||||||||| |
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| T |
12589829 |
tcaagttcagcgaagttgttaacaatgagtccattacttttga |
12589787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 28385750 - 28385871
Alignment:
| Q |
21 |
tgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccg |
120 |
Q |
| |
|
|||||||||||||| |||| | ||||||| |||| |||||||||||||||||| ||||||| || |||||||||||||||| || | ||||||| || |
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| T |
28385750 |
tgctttctcttgaacagttttacgaataaaggaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgtttgacacactcttctcca |
28385849 |
T |
|
| Q |
121 |
tcaagttcagcaaaattgttga |
142 |
Q |
| |
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||||||||| |||| ||||||| |
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| T |
28385850 |
tcaagttcaacaaagttgttga |
28385871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 12541101 - 12541222
Alignment:
| Q |
21 |
tgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccg |
120 |
Q |
| |
|
||||||||||||||| || | |||||| ||||| |||||||||||||||||| ||||||| || |||||||||||||||| || | ||||||| || |
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| T |
12541101 |
tgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctcca |
12541200 |
T |
|
| Q |
121 |
tcaagttcagcaaaattgttga |
142 |
Q |
| |
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||||||||| |||| ||||||| |
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| T |
12541201 |
tcaagttcaacaaagttgttga |
12541222 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 13440611 - 13440725
Alignment:
| Q |
16 |
ctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactctt |
115 |
Q |
| |
|
|||| ||||||||||||||| ||| | ||||||||||||| |||||| ||||||||| | ||||||| || |||||||| ||||||| ||| |||||| |
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| T |
13440611 |
ctctctgctttctcttgaatggttttacgaataagagaagttggaccgagatgccaaaccttgtgacccgtggttttctcatagtgttggatgcactctt |
13440710 |
T |
|
| Q |
116 |
caccgtcaagttcag |
130 |
Q |
| |
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| ||||||||||||| |
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| T |
13440711 |
ctccgtcaagttcag |
13440725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 13448782 - 13448887
Alignment:
| Q |
24 |
tttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtca |
123 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| |||||||||||||||| | ||||||| || | |||||||||||||| || ||||||| || ||| |
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| T |
13448782 |
tttctcttgagcagttttgcgaataagagaagttggaccaagatgccaaaccttgtgacccgtggctttctcgtagtgttgtatgcactcttctccatca |
13448881 |
T |
|
| Q |
124 |
agttca |
129 |
Q |
| |
|
|||||| |
|
|
| T |
13448882 |
agttca |
13448887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 13455257 - 13455358
Alignment:
| Q |
28 |
tcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagtt |
127 |
Q |
| |
|
||||||| ||| ||| ||||||||||| |||||||| ||||||| | ||||||| || ||||| |||||||||| ||| ||||||| || |||| || |
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| T |
13455257 |
tcttgaacggttctgcaaataagagaagttggaccaatatgccaaaccttgtgacctgttgttttttcgtagtgttggatgcactcttctccatcaaatt |
13455356 |
T |
|
| Q |
128 |
ca |
129 |
Q |
| |
|
|| |
|
|
| T |
13455357 |
ca |
13455358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 12641238 - 12641122
Alignment:
| Q |
24 |
tttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtca |
123 |
Q |
| |
|
|||||||| || |||| ||||||||||| ||| |||||||||||||||||| |||| || | |||||||| ||||||| ||| | |||||||| ||| |
|
|
| T |
12641238 |
tttctcttcaaaagttttgcgaataagacaagttggaccaagatgccaagccttgtaacccatggttttctcatagtgtttgatgcaatcttcaccatca |
12641139 |
T |
|
| Q |
124 |
agttcagcaaaattgtt |
140 |
Q |
| |
|
|||||| |||| ||||| |
|
|
| T |
12641138 |
agttcaacaaagttgtt |
12641122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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