View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10030_high_9 (Length: 306)
Name: NF10030_high_9
Description: NF10030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10030_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 43024116 - 43024393
Alignment:
| Q |
17 |
caggagtatcaatcaaggccttaatttttctgtcttcatcagctttgttagttagagcatctggaatcatggtgcttgattgaagaggcagttgatcagg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43024116 |
caggagtatcaatcaaggccttaatttttctgtcttcatcagctttgttagttagagcatctggaatcatggtgcttgattgaagaggcagttgatcagg |
43024215 |
T |
|
| Q |
117 |
tattgaatatacatcattgccaaattcatgccaatccaaattttcaggctgtttaatggtccaaaattatcaatttattaggaaatgaatatgaattgtt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43024216 |
tattgaatatacatcattgccaaattcatgccaatccaatttttcaggctgtttaatggtccaaaattatcaatttattaggaaatgaatatgaattgtt |
43024315 |
T |
|
| Q |
217 |
tatnnnnnnnnnnnnnnnnnnnnngagacctacatattgcatggaagatgtataatctaccggtaaggtactgttctc |
294 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43024316 |
tataaaaaaaatgaaatgaaaaaagagacctacatattgcatggaagatgtataatctaccggtaaggtactgttctc |
43024393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 35062768 - 35062973
Alignment:
| Q |
17 |
caggagtatcaatcaaggccttaatttttctgtcttcatcagctttgttagttagag---catctggaatcatggtgcttgattgaagaggcagttgatc |
113 |
Q |
| |
|
|||||||||||| |||||||||||| || |||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35062768 |
caggagtatcaaccaaggccttaatcttactgtcttcgtcagctttgttagtgagaggagcatctggaatcatggtgcttgattgaacaggcagttgatc |
35062867 |
T |
|
| Q |
114 |
aggtattgaatatacatcattgccaaattcatgccaatccaaattttcaggctgtttaatggtccaaaattatcaatttattaggaaatgaatatgaatt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35062868 |
aggtattgaatatacatcattgccaaattcatgccaatccaaattttcaggctgttcaatggtccaaaattatcaatttattaggaaatgaatatgactt |
35062967 |
T |
|
| Q |
214 |
gtttat |
219 |
Q |
| |
|
|||||| |
|
|
| T |
35062968 |
gtttat |
35062973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 42813775 - 42813978
Alignment:
| Q |
17 |
caggagtatcaatcaaggccttaatttttctgtcttcatcagctttgttagttagag---catctggaatcatggtgcttgattgaagaggcagttgatc |
113 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42813775 |
caggagtatcaatcaaggccttaatcttactgtcttcgtcagctttgctagttagaggagcatctggaatcatggtgcttgattgaacgggcagttgatc |
42813874 |
T |
|
| Q |
114 |
aggtattgaatatacatcattgccaaattcatgccaatccaaattttcaggctgtttaatggtccaaaattatcaatttattaggaaatgaatatgaatt |
213 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42813875 |
aggtattgaatataaatcattgccaaattcatcccaatccaaattttcaggctgttcaatggtccaaagttatcaatttattaggaaatgaatatgaatt |
42813974 |
T |
|
| Q |
214 |
gttt |
217 |
Q |
| |
|
|||| |
|
|
| T |
42813975 |
gttt |
42813978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 35062995 - 35063046
Alignment:
| Q |
242 |
agacctacatattgcatggaagatgtataatctaccggtaaggtactgttct |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35062995 |
agacctacatattgcatggaagatgtataatctgccggtaaggtactgttct |
35063046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 42814003 - 42814056
Alignment:
| Q |
241 |
gagacctacatattgcatggaagatgtataatctaccggtaaggtactgttctc |
294 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
42814003 |
gagacttacatattgcatggaagatgtataatctgccggtaaggtactattctc |
42814056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 41563830 - 41563694
Alignment:
| Q |
19 |
ggagtatcaatcaaggccttaatttttctgtcttcatcagctttgttagttagagca---tctggaatcatggtgcttgattgaagaggcagttgatcag |
115 |
Q |
| |
|
|||||||||||||| |||||||| || || ||||||||| || || | ||| ||| | ||| ||||||| || ||||||||| || |||||||| | |
|
|
| T |
41563830 |
ggagtatcaatcaatgccttaatcttactttcttcatcaactgtgcttgttggaggagcctcttgaatcatattgattgattgaactggaagttgatcgg |
41563731 |
T |
|
| Q |
116 |
gtattgaatatacatcattgccaaattcatgccaatc |
152 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||||| |
|
|
| T |
41563730 |
gtattgaatacaaatcattgccaaattcatcccaatc |
41563694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University