View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10030_low_1 (Length: 726)

Name: NF10030_low_1
Description: NF10030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10030_low_1
NF10030_low_1
[»] chr6 (9 HSPs)
chr6 (13-711)||(33575445-33576143)
chr6 (55-129)||(33568841-33568915)
chr6 (187-347)||(5978666-5978826)
chr6 (79-141)||(19746857-19746919)
chr6 (265-334)||(33568636-33568705)
chr6 (10-127)||(34861965-34862082)
chr6 (372-422)||(5978591-5978641)
chr6 (443-494)||(33568470-33568521)
chr6 (249-295)||(19747033-19747079)
[»] chr3 (3 HSPs)
chr3 (10-341)||(36339760-36340091)
chr3 (466-509)||(36339586-36339629)
chr3 (370-422)||(36339679-36339731)
[»] scaffold0707 (3 HSPs)
scaffold0707 (55-129)||(5235-5309)
scaffold0707 (265-334)||(5030-5099)
scaffold0707 (443-494)||(4864-4915)
[»] chr1 (2 HSPs)
chr1 (271-321)||(17954036-17954086)
chr1 (262-309)||(39379422-39379469)
[»] chr7 (7 HSPs)
chr7 (92-141)||(26237459-26237508)
chr7 (460-494)||(22020920-22020954)
chr7 (271-321)||(24035416-24035466)
chr7 (252-310)||(26237278-26237336)
chr7 (92-129)||(24016646-24016683)
chr7 (265-310)||(26229881-26229926)
chr7 (92-141)||(26256620-26256669)
[»] chr2 (1 HSPs)
chr2 (91-139)||(25376921-25376969)
[»] chr4 (1 HSPs)
chr4 (453-494)||(2910546-2910587)


Alignment Details
Target: chr6 (Bit Score: 579; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 13 - 711
Target Start/End: Complemental strand, 33576143 - 33575445
Alignment:
Q  13 caaaggcagtccatcagaactcgaactgatggcttatcataaggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  33576143 caaaggcagtccatcagaactcgaactgatggcttatcataaggcagctccttaaaacccgtaggaagcaaaaattgtgtgtatgtctctgtcaaaagat 33576044  T
Q  113 caagcgaaacaatcacacatttctcaacaggaccaataagagttttaaatgttcctccaacctcaattggtgcgtagtcactgtgaatagctaaccagtt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33576043 caagcgaaacaatcacacatttctcaacaggaccaataagagttttaaatgttcctccaacctcaattggtgcgtagtcactgtgaatagctaaccagtt 33575944  T
Q  213 aatagttccactacaatatacaccatcatttcccaaaataggaacgaaagggaaactttgaatatttctccaacaattatcacccaaattgaaaacttaa 312  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |    
T  33575943 aatagttccactaaaatgaacaccatcatttcccaaaataggaacgaaagggaaacttcgaatatttctccaacaattatcacccgaattgaaaacttta 33575844  T
Q  313 accttgcttctccataaacctttgttctcgatctcnnnnnnnnnnnnnnnncctatttgaagtgccactaccttgtaagttccagttaaataatcataac 412  Q
    ||||||||||||||||||| |||||||||||||||                ||||| |||||||||||||||||||||||||| |||||||||||| |||    
T  33575843 accttgcttctccataaacttttgttctcgatctctttttctttatttttacctatatgaagtgccactaccttgtaagttccggttaaataatcacaac 33575744  T
Q  413 caacactgaatacaaaagtgctatccctatagtcacgaagaaacccaaatttatcagatattgtccttgttgcagggttccaaacatagaaccagtactt 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33575743 caacactgaatacaaaagtgctatccctatagtcacgaagaaacccaaatttatcagatattgtccttgttgcagggttccaaacatagaaccagtactt 33575644  T
Q  513 aatgtgtgtcactaagcgtggcctagaaagtaaaaatatcaatccgttgcaagaaccaacaaccagaggaaattcacttattatgggacagcggaagtgg 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33575643 aatgtgtgtcactaagcgtggcctagaaagtaaaaatatcaatccgttgtaagaaccaacaaccagaggaaattcacttattatgggacagcggaagtgg 33575544  T
Q  613 ttaaaggcaacagcaattgaccgagtctcacgtacaagatgcaaggacaagacactagtctcacagtctgtaagctgtgttatcaagtgatgattttgt 711  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||    
T  33575543 ttaaaggcaacagcaattgacggagtctcacgtacaagatgcaaggacaagacactagtatcacggtcagtaagctgtgttattaagtgatgattttgt 33575445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 33568915 - 33568841
Alignment:
Q  55 ggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcaca 129  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||    
T  33568915 ggcacctcattaaaacccttaggaagcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcaca 33568841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 187 - 347
Target Start/End: Complemental strand, 5978826 - 5978666
Alignment:
Q  187 tagtcactgtgaatagctaaccagttaatagttccactacaatatacaccatcatttcccaaaataggaacgaaagggaaactttgaatatttctccaac 286  Q
    ||||||| ||||||||||| ||| ||||  ||||||||  |||  ||||||||||| || | || |||||| ||||| ||||||||||| | ||||||||    
T  5978826 tagtcaccgtgaatagctagccaattaaccgttccactcaaatgcacaccatcattcccgataagaggaaccaaaggaaaactttgaatctctctccaac 5978727  T
Q  287 aattatcacccaaattgaaaacttaaaccttgcttctccataaacctttgttctcgatctc 347  Q
    ||  |||||||||| |||||||    |||||||||||||||||||||| | ||||| ||||    
T  5978726 aaaaatcacccaaactgaaaaccctcaccttgcttctccataaaccttcggtctcggtctc 5978666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 19746857 - 19746919
Alignment:
Q  79 agcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaaca 141  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||||    
T  19746857 agcaaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaaca 19746919  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 265 - 334
Target Start/End: Complemental strand, 33568705 - 33568636
Alignment:
Q  265 aaactttgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgcttctccataaacctt 334  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||   ||||   |||||||||||||||    
T  33568705 aaactttgaatatttctccaacaactatcacccaaactgaaaactcgcacctcatttctccataaacctt 33568636  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 34861965 - 34862082
Alignment:
Q  10 aagcaaaggcagtccatcagaactcgaactgatggcttatcataaggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaa 109  Q
    ||||||||||| |||| |||||| ||||   |||||| | || | |||| ||| ||||||||||| |||||||| || | | |||||||||| || ||||    
T  34861965 aagcaaaggcaatccaacagaacccgaagatatggctcagcacatggcaactctttaaaacccttgggaagcaacaaatatttgtatgtctcggtggaaa 34862064  T
Q  110 gatcaagcgaaacaatca 127  Q
    ||||||||||| ||||||    
T  34862065 gatcaagcgaagcaatca 34862082  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 422
Target Start/End: Complemental strand, 5978641 - 5978591
Alignment:
Q  372 aagtgccactaccttgtaagttccagttaaataatcataaccaacactgaa 422  Q
    |||||||||||||||||| |||||||||||||||||| |||| | ||||||    
T  5978641 aagtgccactaccttgtatgttccagttaaataatcacaaccgaaactgaa 5978591  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 494
Target Start/End: Complemental strand, 33568521 - 33568470
Alignment:
Q  443 agtcacgaagaaacccaaatttatcagatattgtccttgttgcagggttcca 494  Q
    ||||||||| |||||| || || ||||||||||||| |||||||||||||||    
T  33568521 agtcacgaaaaaaccctaaattttcagatattgtccctgttgcagggttcca 33568470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 19747033 - 19747079
Alignment:
Q  249 aataggaacgaaagggaaactttgaatatttctccaacaattatcac 295  Q
    ||||||||  ||||||||||| | |||||||||||||||||||||||    
T  19747033 aataggaatcaaagggaaactctcaatatttctccaacaattatcac 19747079  T

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Target: chr3 (Bit Score: 88; Significance: 6e-42; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 10 - 341
Target Start/End: Complemental strand, 36340091 - 36339760
Alignment:
Q  10 aagcaaaggcagtccatcagaactcgaactgatggcttatcataaggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaa 109  Q
    ||||||||||||||||||||||| ||||  ||||||| | |  | |||| ||||||||||||   |||||||||||| ||  |||||||||| |||||||    
T  36340091 aagcaaaggcagtccatcagaacccgaagagatggctcaacgcatggcacctccttaaaacctgcaggaagcaaaaactgcctgtatgtctccgtcgaaa 36339992  T
Q  110 gatcaagcgaaacaatcacacatttctcaacaggaccaataagagttttaaatgttcctccaacctcaattggtgcgtagtcactgtgaatagctaacca 209  Q
    |||||||||||||||||||  ||| ||||||| ||  ||||  || ||||  |||| |||||   ||||||| | || |||| |    || ||| |||||    
T  36339991 gatcaagcgaaacaatcaccaattgctcaacaagaggaatataagctttacttgtttctccacaatcaattgatacgaagtcgccagaaagagccaacca 36339892  T
Q  210 gttaatagttccactacaatatacaccatcatttcccaaaataggaacgaaagggaaactttgaatatttctccaacaattatcacccaaattgaaaact 309  Q
    |||||||| ||||||  |||  ||||||||||| |  | || |||||| ||||||||||||||||||| |||||||||||||||||| ||| | ||||||    
T  36339891 gttaatagctccactcaaatgcacaccatcattccatataagaggaaccaaagggaaactttgaatatatctccaacaattatcaccaaaactaaaaact 36339792  T
Q  310 taaaccttgcttctccataaacctttgttctc 341  Q
       ||||||||||||||||||| || ||||||    
T  36339791 gccaccttgcttctccataaactttcgttctc 36339760  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 466 - 509
Target Start/End: Complemental strand, 36339629 - 36339586
Alignment:
Q  466 tcagatattgtccttgttgcagggttccaaacatagaaccagta 509  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
T  36339629 tcagatattgtccttgttgcagggttccaaaaacagaaccagta 36339586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 422
Target Start/End: Complemental strand, 36339731 - 36339679
Alignment:
Q  370 tgaagtgccactaccttgtaagttccagttaaataatcataaccaacactgaa 422  Q
    ||||| |||||||||||||||||||||||||||  |||| |||||| ||||||    
T  36339731 tgaagcgccactaccttgtaagttccagttaaacgatcacaaccaaaactgaa 36339679  T

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Target: scaffold0707 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 5309 - 5235
Alignment:
Q  55 ggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcaca 129  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||    
T  5309 ggcacctcattaaaacccttaggaagcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcaca 5235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 265 - 334
Target Start/End: Complemental strand, 5099 - 5030
Alignment:
Q  265 aaactttgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgcttctccataaacctt 334  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||   ||||   |||||||||||||||    
T  5099 aaactttgaatatttctccaacaactatcacccaaactgaaaactcgcacctcatttctccataaacctt 5030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 494
Target Start/End: Complemental strand, 4915 - 4864
Alignment:
Q  443 agtcacgaagaaacccaaatttatcagatattgtccttgttgcagggttcca 494  Q
    ||||||||| |||||| || || ||||||||||||| |||||||||||||||    
T  4915 agtcacgaaaaaaccctaaattttcagatattgtccctgttgcagggttcca 4864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 17954036 - 17954086
Alignment:
Q  271 tgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgctt 321  Q
    |||||||||||||||||||||||||||||| || |||||| ||||| ||||    
T  17954036 tgaatatttctccaacaattatcacccaaactgtaaactttaacctcgctt 17954086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 39379422 - 39379469
Alignment:
Q  262 gggaaactttgaatatttctccaacaattatcacccaaattgaaaact 309  Q
    |||||||||| |||||||||||||  ||||||||||||| ||||||||    
T  39379422 gggaaactttcaatatttctccaaacattatcacccaaactgaaaact 39379469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 26237508 - 26237459
Alignment:
Q  92 tgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaaca 141  Q
    ||||||||| |||||||||||||||||||| ||||||| ||| |||||||    
T  26237508 tgtatgtctttgtcgaaagatcaagcgaaagaatcacaaattgctcaaca 26237459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 22020954 - 22020920
Alignment:
Q  460 aatttatcagatattgtccttgttgcagggttcca 494  Q
    ||||||||||||||||||||||| |||||||||||    
T  22020954 aatttatcagatattgtccttgtagcagggttcca 22020920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 24035466 - 24035416
Alignment:
Q  271 tgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgctt 321  Q
    |||||||||||||||||||||||||| | |||||||| || |||| |||||    
T  24035466 tgaatatttctccaacaattatcaccaagattgaaaattttaaccctgctt 24035416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 26237336 - 26237278
Alignment:
Q  252 aggaacgaaagggaaactttgaatatttctccaacaattatcacccaaattgaaaactt 310  Q
    ||||||||  || ||||||||||||||||||||||| ||| |||||||| | |||||||    
T  26237336 aggaacgaccggaaaactttgaatatttctccaacagttaacacccaaactaaaaactt 26237278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 24016683 - 24016646
Alignment:
Q  92 tgtatgtctctgtcgaaagatcaagcgaaacaatcaca 129  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  24016683 tgtatgtctccgtcgaaagatcaagagaaacaatcaca 24016646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 26229926 - 26229881
Alignment:
Q  265 aaactttgaatatttctccaacaattatcacccaaattgaaaactt 310  Q
    ||||||||||||||||||||||| ||| |||||||| | |||||||    
T  26229926 aaactttgaatatttctccaacagttaccacccaaactaaaaactt 26229881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 26256669 - 26256620
Alignment:
Q  92 tgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaaca 141  Q
    |||||||||| || |||||||||||||||| ||||||| ||| |||||||    
T  26256669 tgtatgtctccgttgaaagatcaagcgaaataatcacaaattgctcaaca 26256620  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 25376969 - 25376921
Alignment:
Q  91 gtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaa 139  Q
    ||||||||||| ||||| ||||| ||||||||||||||| |||||||||    
T  25376969 gtgtatgtctcagtcgagagatcgagcgaaacaatcacatatttctcaa 25376921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 453 - 494
Target Start/End: Complemental strand, 2910587 - 2910546
Alignment:
Q  453 aaacccaaatttatcagatattgtccttgttgcagggttcca 494  Q
    |||||| ||||||| ||||||||||||||| |||||||||||    
T  2910587 aaaccctaatttattagatattgtccttgtggcagggttcca 2910546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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