View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10030_low_10 (Length: 342)

Name: NF10030_low_10
Description: NF10030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10030_low_10
NF10030_low_10
[»] chr7 (26 HSPs)
chr7 (19-102)||(47905258-47905336)
chr7 (298-342)||(388169-388214)
chr7 (298-342)||(930976-931021)
chr7 (298-342)||(3925793-3925838)
chr7 (298-342)||(3931646-3931691)
chr7 (298-342)||(10319161-10319206)
chr7 (298-342)||(16537077-16537122)
chr7 (298-342)||(16628540-16628585)
chr7 (298-339)||(17802179-17802220)
chr7 (298-342)||(18852495-18852540)
chr7 (298-342)||(19194429-19194474)
chr7 (298-342)||(19778522-19778567)
chr7 (298-342)||(21917518-21917563)
chr7 (298-342)||(23909895-23909940)
chr7 (298-342)||(23910123-23910168)
chr7 (298-342)||(25986925-25986970)
chr7 (298-342)||(26612611-26612656)
chr7 (298-342)||(30699292-30699337)
chr7 (298-342)||(34533481-34533526)
chr7 (298-342)||(35121681-35121726)
chr7 (298-342)||(37452317-37452362)
chr7 (298-342)||(38053416-38053461)
chr7 (298-342)||(38445674-38445719)
chr7 (298-342)||(38879161-38879206)
chr7 (298-342)||(43408472-43408517)
chr7 (298-339)||(45863023-45863064)
[»] scaffold0272 (1 HSPs)
scaffold0272 (298-342)||(20868-20913)
[»] chr6 (16 HSPs)
chr6 (298-342)||(5606565-5606610)
chr6 (299-342)||(28930465-28930509)
chr6 (301-342)||(11445979-11446021)
chr6 (298-342)||(1814976-1815021)
chr6 (298-342)||(2100380-2100425)
chr6 (298-342)||(2565078-2565123)
chr6 (298-342)||(2565347-2565392)
chr6 (298-342)||(7391745-7391790)
chr6 (298-342)||(10894138-10894183)
chr6 (298-342)||(10977658-10977703)
chr6 (298-342)||(11322293-11322338)
chr6 (298-342)||(11746247-11746292)
chr6 (298-342)||(15149727-15149772)
chr6 (298-342)||(18683012-18683057)
chr6 (298-342)||(28930732-28930777)
chr6 (299-342)||(31833267-31833311)
[»] chr4 (23 HSPs)
chr4 (298-342)||(3770428-3770473)
chr4 (298-342)||(55586616-55586661)
chr4 (298-339)||(35083852-35083894)
chr4 (298-342)||(232959-233004)
chr4 (298-342)||(5344270-5344315)
chr4 (298-342)||(7644457-7644502)
chr4 (298-342)||(8483128-8483173)
chr4 (298-342)||(10046204-10046249)
chr4 (298-342)||(11530028-11530073)
chr4 (298-342)||(12640820-12640865)
chr4 (298-342)||(17262090-17262135)
chr4 (298-342)||(18988179-18988224)
chr4 (298-342)||(31250737-31250782)
chr4 (298-342)||(34362820-34362865)
chr4 (298-342)||(34363086-34363131)
chr4 (298-342)||(39136298-39136343)
chr4 (298-342)||(44921878-44921923)
chr4 (298-342)||(45289768-45289813)
chr4 (298-342)||(47853976-47854021)
chr4 (298-342)||(48278184-48278229)
chr4 (298-342)||(54216225-54216270)
chr4 (299-342)||(22159830-22159874)
chr4 (298-342)||(54606888-54606932)
[»] chr3 (27 HSPs)
chr3 (298-342)||(29168996-29169041)
chr3 (298-342)||(40082212-40082257)
chr3 (298-342)||(47943459-47943504)
chr3 (298-342)||(49997924-49997969)
chr3 (298-342)||(2118982-2119027)
chr3 (298-342)||(9153477-9153522)
chr3 (298-342)||(17483826-17483871)
chr3 (298-342)||(19914476-19914521)
chr3 (298-342)||(21841979-21842024)
chr3 (298-342)||(25126266-25126311)
chr3 (298-342)||(31117620-31117665)
chr3 (298-342)||(32205115-32205160)
chr3 (298-342)||(32508187-32508232)
chr3 (298-342)||(33576677-33576722)
chr3 (298-342)||(38511925-38511970)
chr3 (298-342)||(41223513-41223558)
chr3 (298-342)||(41282115-41282160)
chr3 (298-342)||(42230033-42230078)
chr3 (298-342)||(43678970-43679015)
chr3 (298-342)||(45760501-45760546)
chr3 (298-342)||(47943728-47943773)
chr3 (298-339)||(51187959-51188000)
chr3 (298-342)||(51214427-51214472)
chr3 (298-342)||(51336890-51336935)
chr3 (298-342)||(53531806-53531851)
chr3 (299-342)||(49859719-49859763)
chr3 (299-342)||(52613590-52613634)
[»] chr1 (29 HSPs)
chr1 (298-342)||(3383964-3384009)
chr1 (298-342)||(6491416-6491461)
chr1 (298-342)||(40815134-40815179)
chr1 (300-342)||(29704619-29704662)
chr1 (298-342)||(6183250-6183295)
chr1 (298-342)||(6491684-6491729)
chr1 (298-342)||(8770463-8770508)
chr1 (298-342)||(11018670-11018715)
chr1 (298-342)||(13791843-13791888)
chr1 (298-342)||(16491243-16491288)
chr1 (298-342)||(18589849-18589894)
chr1 (298-342)||(22075619-22075664)
chr1 (298-342)||(22204305-22204350)
chr1 (298-342)||(22204574-22204619)
chr1 (298-342)||(23341964-23342009)
chr1 (298-339)||(26932583-26932624)
chr1 (298-342)||(32341760-32341805)
chr1 (298-342)||(37029196-37029241)
chr1 (298-342)||(38622671-38622716)
chr1 (298-342)||(39427411-39427456)
chr1 (298-342)||(42589420-42589465)
chr1 (298-342)||(45884948-45884993)
chr1 (298-342)||(46320676-46320721)
chr1 (298-342)||(46320944-46320989)
chr1 (298-342)||(47764091-47764136)
chr1 (298-342)||(52143433-52143478)
chr1 (298-342)||(52149782-52149827)
chr1 (299-342)||(20224079-20224123)
chr1 (299-342)||(41585553-41585597)
[»] chr5 (17 HSPs)
chr5 (299-342)||(22773853-22773897)
chr5 (301-342)||(16597044-16597086)
chr5 (298-342)||(2710605-2710650)
chr5 (298-342)||(3020862-3020907)
chr5 (298-342)||(4096719-4096764)
chr5 (298-342)||(8339959-8340004)
chr5 (298-342)||(13960958-13961003)
chr5 (298-342)||(21583323-21583368)
chr5 (298-342)||(23263145-23263190)
chr5 (298-342)||(26323643-26323688)
chr5 (298-342)||(31456129-31456174)
chr5 (298-342)||(34082369-34082414)
chr5 (298-342)||(34169056-34169101)
chr5 (298-342)||(34606638-34606683)
chr5 (298-342)||(34734341-34734386)
chr5 (298-342)||(35306970-35307015)
chr5 (298-342)||(40687666-40687711)
[»] scaffold0182 (2 HSPs)
scaffold0182 (301-342)||(12050-12092)
scaffold0182 (298-342)||(20595-20640)
[»] chr8 (26 HSPs)
chr8 (301-342)||(33881355-33881397)
chr8 (298-342)||(414923-414968)
chr8 (298-342)||(2321516-2321561)
chr8 (298-342)||(4107116-4107161)
chr8 (298-342)||(4167468-4167513)
chr8 (298-342)||(6014419-6014464)
chr8 (298-342)||(6641866-6641911)
chr8 (298-342)||(7013618-7013663)
chr8 (298-342)||(15187928-15187973)
chr8 (298-342)||(17943358-17943403)
chr8 (298-342)||(20813736-20813781)
chr8 (298-342)||(20819752-20819797)
chr8 (298-342)||(23233781-23233826)
chr8 (298-342)||(23234048-23234093)
chr8 (298-339)||(29197299-29197340)
chr8 (298-342)||(29233773-29233818)
chr8 (298-342)||(30358843-30358888)
chr8 (298-342)||(31191738-31191783)
chr8 (298-342)||(37953374-37953419)
chr8 (298-339)||(38701931-38701972)
chr8 (298-342)||(41554607-41554652)
chr8 (298-342)||(42866361-42866406)
chr8 (298-342)||(42906372-42906417)
chr8 (298-342)||(45106435-45106480)
chr8 (299-342)||(6335333-6335377)
chr8 (298-341)||(6745263-6745307)
[»] chr2 (9 HSPs)
chr2 (301-342)||(41829733-41829775)
chr2 (298-342)||(22194716-22194761)
chr2 (298-342)||(24205294-24205339)
chr2 (298-342)||(24895179-24895224)
chr2 (298-342)||(31784252-31784297)
chr2 (298-342)||(38731279-38731324)
chr2 (298-342)||(39642729-39642774)
chr2 (298-342)||(40493913-40493958)
chr2 (298-342)||(2937057-2937101)
[»] scaffold0014 (1 HSPs)
scaffold0014 (298-342)||(79255-79300)


Alignment Details
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 47905336 - 47905258
Alignment:
Q  19 attagagttaaaagtatgatgatcttatgttgtgctccttcacaagaacttactgtgaagtgaagcatctggtgtgtaaaaagc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||    
T  47905336 attagagttaaaagtatgatgatcttatgttgtgctccttcacaagaacttactgt-----gaagcatctggtgtgtaaaaagc 47905258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 388214 - 388169
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  388214 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 388169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 931021 - 930976
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  931021 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 930976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 3925793 - 3925838
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  3925793 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 3925838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 3931646 - 3931691
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||||||||||||| ||||    
T  3931646 ggcttaattgcacttttggacctctatcttttcaaaagttggggtt 3931691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 10319206 - 10319161
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  10319206 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 10319161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 16537077 - 16537122
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  16537077 ggcttaattgcacttttggactcctatcttttcaaaagttgcggtt 16537122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 16628585 - 16628540
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  16628585 ggcttaattgcacttttggactcctatcttttcaaaagttgcggtt 16628540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 17802220 - 17802179
Alignment:
Q  298 ggcttaattgcactttggacatctatcttttcaaaagttgcg 339  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  17802220 ggcttaattgcacttttgacccctatcttttcaaaagttgcg 17802179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 18852495 - 18852540
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  18852495 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 18852540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 19194474 - 19194429
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||    
T  19194474 ggcttaattgcacttttggacctctatctttccaaaagttgcggtt 19194429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 19778567 - 19778522
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  19778567 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 19778522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 21917563 - 21917518
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  21917563 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 21917518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 23909895 - 23909940
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  23909895 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 23909940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 23910168 - 23910123
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  23910168 ggcttaattgcacttttggaccactatcttttcaaaagttgcggtt 23910123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 25986925 - 25986970
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  25986925 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 25986970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 26612656 - 26612611
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  26612656 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 26612611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 30699337 - 30699292
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  30699337 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 30699292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 34533526 - 34533481
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  34533526 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 34533481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 35121726 - 35121681
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  35121726 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 35121681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 37452362 - 37452317
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  37452362 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 37452317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 38053461 - 38053416
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  38053461 ggcttaattgcacttttggactcctatcttttcaaaagttgcggtt 38053416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 38445719 - 38445674
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  38445719 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 38445674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 38879161 - 38879206
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||| ||||| |||| ||||||||||||||||||||||||    
T  38879161 ggcttaattgtacttttggacctctatcttttcaaaagttgcggtt 38879206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 43408517 - 43408472
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  43408517 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 43408472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 45863023 - 45863064
Alignment:
Q  298 ggcttaattgcactttggacatctatcttttcaaaagttgcg 339  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  45863023 ggcttaattgcacttttgacccctatcttttcaaaagttgcg 45863064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 20868 - 20913
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||    
T  20868 ggcttaattgcacttttggacctctatcttttcaaaagttgcggtt 20913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 5606610 - 5606565
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||    
T  5606610 ggcttaattgcacttttggacctctatcttttcaaaagttgcggtt 5606565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 28930465 - 28930509
Alignment:
Q  299 gcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||    
T  28930465 gcttaattgcacttttggacctctatcttttcaaaagttgcggtt 28930509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 11445979 - 11446021
Alignment:
Q  301 ttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    ||||||||||||| |||| ||||||||||||||||||||||||    
T  11445979 ttaattgcacttttggacctctatcttttcaaaagttgcggtt 11446021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 1814976 - 1815021
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  1814976 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 1815021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 2100380 - 2100425
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||    
T  2100380 ggcttaattgcacttttggacctctatctttccaaaagttgcggtt 2100425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 2565078 - 2565123
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  2565078 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 2565123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 2565392 - 2565347
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  2565392 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 2565347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 7391790 - 7391745
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||    
T  7391790 ggcttaattgcacttttggacctctatctttccaaaagttgcggtt 7391745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 10894183 - 10894138
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||    
T  10894183 ggcttaattgcacttttggacctctatctttccaaaagttgcggtt 10894138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 10977658 - 10977703
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  10977658 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 10977703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 11322338 - 11322293
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  11322338 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 11322293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 11746292 - 11746247
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  11746292 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 11746247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 15149727 - 15149772
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  15149727 ggcttaattgcacttttggactcctatcttttcaaaagttgcggtt 15149772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 18683012 - 18683057
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||||||||||||| ||||    
T  18683012 ggcttaattgcacttttggacctctatcttttcaaaagttgtggtt 18683057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 28930777 - 28930732
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  28930777 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 28930732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 31833267 - 31833311
Alignment:
Q  299 gcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||    
T  31833267 gcttaattgcacttttggacccctatcttttcaaaagttgcggtt 31833311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 3770473 - 3770428
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||    
T  3770473 ggcttaattgcacttttggacctctatcttttcaaaagttgcggtt 3770428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 55586616 - 55586661
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||    
T  55586616 ggcttaattgcacttttggacctctatcttttcaaaagttgcggtt 55586661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 35083894 - 35083852
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcg 339  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  35083894 ggcttaattgcacttttggacctctatcttttcaaaagttgcg 35083852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 233004 - 232959
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  233004 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 232959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 5344270 - 5344315
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  5344270 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 5344315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 7644457 - 7644502
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  7644457 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 7644502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 8483173 - 8483128
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||    
T  8483173 ggcttaattgcacttttggacctctattttttcaaaagttgcggtt 8483128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 10046249 - 10046204
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  10046249 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 10046204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 11530073 - 11530028
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  11530073 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 11530028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 12640820 - 12640865
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  12640820 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 12640865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 17262090 - 17262135
Alignment:
Q  298 ggcttaattgcact-ttggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||    
T  17262090 ggcttaattgcactcttggaccactatcttttcaaaagttgcggtt 17262135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 18988179 - 18988224
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  18988179 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 18988224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 31250782 - 31250737
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  31250782 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 31250737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 34362820 - 34362865
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  34362820 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 34362865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 34363131 - 34363086
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  34363131 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 34363086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 39136298 - 39136343
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  39136298 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 39136343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 44921923 - 44921878
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  44921923 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 44921878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 45289813 - 45289768
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  45289813 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 45289768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 47853976 - 47854021
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  47853976 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 47854021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 48278229 - 48278184
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||    
T  48278229 ggcttaattgcacttttggacctctatctttccaaaagttgcggtt 48278184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 54216270 - 54216225
Alignment:
Q  298 ggcttaattgcactttgga-catctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| || | ||||||||||||||||||||||||    
T  54216270 ggcttaattgcacttttgaacctctatcttttcaaaagttgcggtt 54216225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 22159830 - 22159874
Alignment:
Q  299 gcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||    
T  22159830 gcttaattgcacttttggacccctatcttttcaaaagttgcggtt 22159874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 54606888 - 54606932
Alignment:
Q  298 ggcttaattgcactttggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||| | |||||||  |||||||||||||||||||||||    
T  54606888 ggcttaattgtattttggacccctatcttttcaaaagttgcggtt 54606932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 29169041 - 29168996
Alignment:
Q  298 ggcttaattgcactttg-gacatctatcttttcaaaagttgcggtt 342  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||    
T  29169041 ggcttaattgcacttttagacatctatcttttcaaaagttgcggtt 29168996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 40082212 - 40082257
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||    
T  40082212 ggcttaattgcacttttggacacctatcttttcaaaagttgcggtt 40082257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 47943459 - 47943504
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||    
T  47943459 ggcttaattgcacttttggacctctatcttttcaaaagttgcggtt 47943504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 49997969 - 49997924
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||    
T  49997969 ggcttaattgcacttttggacctctatcttttcaaaagttgcggtt 49997924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 2119027 - 2118982
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  2119027 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 2118982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 9153477 - 9153522
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  9153477 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 9153522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 17483871 - 17483826
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  17483871 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 17483826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 19914476 - 19914521
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  19914476 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 19914521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 21842024 - 21841979
Alignment:
Q  298 ggcttaattgcactttg-gacatctatcttttcaaaagttgcggtt 342  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||||    
T  21842024 ggcttaattgcacttttagacctctatcttttcaaaagttgcggtt 21841979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 25126311 - 25126266
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  25126311 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 25126266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 31117620 - 31117665
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  31117620 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 31117665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 32205160 - 32205115
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  32205160 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 32205115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 32508232 - 32508187
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||    
T  32508232 ggcttaattgcacttttggacctctatctttccaaaagttgcggtt 32508187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 33576722 - 33576677
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  33576722 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 33576677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 38511970 - 38511925
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  38511970 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 38511925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 41223513 - 41223558
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  41223513 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 41223558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 41282160 - 41282115
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  41282160 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 41282115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 42230033 - 42230078
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||    
T  42230033 ggcttaattgcacttttggacctctatctttccaaaagttgcggtt 42230078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 43679015 - 43678970
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||| |||| ||||||||||||||||||    
T  43679015 ggcttaattgcacttttggacacctatattttcaaaagttgcggtt 43678970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 45760546 - 45760501
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  45760546 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 45760501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 47943773 - 47943728
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  47943773 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 47943728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 51188000 - 51187959
Alignment:
Q  298 ggcttaattgcactttggacatctatcttttcaaaagttgcg 339  Q
    |||||||||||||||| ||| |||||||||| ||||||||||    
T  51188000 ggcttaattgcacttttgacctctatctttttaaaagttgcg 51187959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 51214472 - 51214427
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| |||||||||| |||||||||||||    
T  51214472 ggcttaattgcacttttggacctctatctttttaaaagttgcggtt 51214427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 51336890 - 51336935
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  51336890 ggcttaattgcacttttggactcctatcttttcaaaagttgcggtt 51336935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 53531806 - 53531851
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  53531806 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 53531851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 49859763 - 49859719
Alignment:
Q  299 gcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    ||||||||| ||||| |||| ||||||||||||||||||||||||    
T  49859763 gcttaattgtacttttggacctctatcttttcaaaagttgcggtt 49859719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 52613634 - 52613590
Alignment:
Q  299 gcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||    
T  52613634 gcttaattgcacttttggacccctatcttttcaaaagttgcggtt 52613590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 3383964 - 3384009
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||    
T  3383964 ggcttaattgcacttttggacctctatcttttcaaaagttgcggtt 3384009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 6491416 - 6491461
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||    
T  6491416 ggcttaattgcacttttggacctctatcttttcaaaagttgcggtt 6491461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 40815179 - 40815134
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||    
T  40815179 ggcttaattgcacttttggacctctatcttttcaaaagttgcggtt 40815134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 29704619 - 29704662
Alignment:
Q  300 cttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||| |||| ||||||||||||||||||||||||    
T  29704619 cttaattgcacttttggacctctatcttttcaaaagttgcggtt 29704662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 6183295 - 6183250
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  6183295 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 6183250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 6491729 - 6491684
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  6491729 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 6491684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 8770463 - 8770508
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  8770463 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 8770508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 11018715 - 11018670
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  11018715 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 11018670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 13791888 - 13791843
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  13791888 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 13791843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 16491288 - 16491243
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||    
T  16491288 ggcttaattgcacttttggacctttatcttttcaaaagttgcggtt 16491243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 18589849 - 18589894
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||    
T  18589849 ggcttaattgcacttttggacctctatctttccaaaagttgcggtt 18589894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 22075664 - 22075619
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  22075664 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 22075619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 22204305 - 22204350
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  22204305 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 22204350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 22204619 - 22204574
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||    
T  22204619 ggcttaattgcacttttggacctctatctttccaaaagttgcggtt 22204574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 23341964 - 23342009
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  23341964 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 23342009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 26932583 - 26932624
Alignment:
Q  298 ggcttaattgcactttggacatctatcttttcaaaagttgcg 339  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  26932583 ggcttaattgcacttttgacccctatcttttcaaaagttgcg 26932624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 32341805 - 32341760
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  32341805 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 32341760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 37029241 - 37029196
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||    
T  37029241 ggcttaattgcacttttggacctctatctttccaaaagttgcggtt 37029196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 38622716 - 38622671
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  38622716 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 38622671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 39427411 - 39427456
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  39427411 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 39427456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 42589420 - 42589465
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||    
T  42589420 ggcttaattgcacttttggacttctatctttacaaaagttgcggtt 42589465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 45884948 - 45884993
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  45884948 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 45884993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 46320676 - 46320721
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  46320676 ggcttaattgcacttttggactcctatcttttcaaaagttgcggtt 46320721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 46320989 - 46320944
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||    
T  46320989 ggcttaattgcacttttggacctctatctttccaaaagttgcggtt 46320944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 47764091 - 47764136
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||    
T  47764091 ggcttaattgcacttttggacctctattttttcaaaagttgcggtt 47764136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 52143478 - 52143433
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  52143478 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 52143433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 52149827 - 52149782
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  52149827 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 52149782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 20224079 - 20224123
Alignment:
Q  299 gcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||    
T  20224079 gcttaattgcacttttggactcctatcttttcaaaagttgcggtt 20224123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 41585597 - 41585553
Alignment:
Q  299 gcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    ||||||||||||||| |||| |||||||||| |||||||||||||    
T  41585597 gcttaattgcacttttggacctctatctttttaaaagttgcggtt 41585553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 22773897 - 22773853
Alignment:
Q  299 gcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||    
T  22773897 gcttaattgcacttttggacctctatcttttcaaaagttgcggtt 22773853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 16597044 - 16597086
Alignment:
Q  301 ttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    ||||||||||||| |||| ||||||||||||||||||||||||    
T  16597044 ttaattgcacttttggacctctatcttttcaaaagttgcggtt 16597086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 2710650 - 2710605
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  2710650 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 2710605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 3020907 - 3020862
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  3020907 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 3020862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 4096764 - 4096719
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||    
T  4096764 ggcttaattgcacttttggacctttatcttttcaaaagttgcggtt 4096719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 8339959 - 8340004
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  8339959 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 8340004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 13961003 - 13960958
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||| ||||| |||| ||||||||||||||||||||||||    
T  13961003 ggcttaattgtacttttggacctctatcttttcaaaagttgcggtt 13960958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 21583323 - 21583368
Alignment:
Q  298 ggcttaattgcactttgg-acatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||||| || ||||||||| ||||||||||||||    
T  21583323 ggcttaattgcactttgggacctctatctttccaaaagttgcggtt 21583368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 23263145 - 23263190
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  23263145 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 23263190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 26323688 - 26323643
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  26323688 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 26323643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 31456174 - 31456129
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  31456174 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 31456129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 34082414 - 34082369
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  34082414 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 34082369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 34169101 - 34169056
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  34169101 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 34169056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 34606683 - 34606638
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  34606683 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 34606638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 34734386 - 34734341
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  34734386 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 34734341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 35307015 - 35306970
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  35307015 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 35306970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 40687666 - 40687711
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  40687666 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 40687711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 12050 - 12092
Alignment:
Q  301 ttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    ||||||||||||| |||| ||||||||||||||||||||||||    
T  12050 ttaattgcacttttggacctctatcttttcaaaagttgcggtt 12092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 20595 - 20640
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  20595 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 20640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 33881397 - 33881355
Alignment:
Q  301 ttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    ||||||||||||| |||| ||||||||||||||||||||||||    
T  33881397 ttaattgcacttttggacctctatcttttcaaaagttgcggtt 33881355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 414968 - 414923
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  414968 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 414923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 2321516 - 2321561
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  2321516 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 2321561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 4107161 - 4107116
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  4107161 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 4107116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 4167513 - 4167468
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  4167513 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 4167468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 6014419 - 6014464
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  6014419 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 6014464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 6641911 - 6641866
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  6641911 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 6641866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 7013663 - 7013618
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||    
T  7013663 ggcttaattgcacttttggatctctatcttttcaaaagttgcggtt 7013618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 15187928 - 15187973
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  15187928 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 15187973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 17943358 - 17943403
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  17943358 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 17943403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 20813736 - 20813781
Alignment:
Q  298 ggcttaattgcactt-tggacatctatcttttcaaaagttgcggtt 342  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||    
T  20813736 ggcttaattgcacttgtggacccctatcttttcaaaagttgcggtt 20813781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 20819752 - 20819797
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  20819752 ggcttaattgcacttttggaccactatcttttcaaaagttgcggtt 20819797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 23233781 - 23233826
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  23233781 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 23233826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 23234093 - 23234048
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  23234093 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 23234048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 29197299 - 29197340
Alignment:
Q  298 ggcttaattgcactttggacatctatcttttcaaaagttgcg 339  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  29197299 ggcttaattgcacttttgacccctatcttttcaaaagttgcg 29197340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 29233818 - 29233773
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| |||||||||| |||||||||||||    
T  29233818 ggcttaattgcacttttggacctctatctttttaaaagttgcggtt 29233773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 30358843 - 30358888
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| || |||||||||||||||||||||    
T  30358843 ggcttaattgcacttttggacctcgatcttttcaaaagttgcggtt 30358888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 31191783 - 31191738
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| |||||||||| |||||||||||||    
T  31191783 ggcttaattgcacttttggacctctatctttttaaaagttgcggtt 31191738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 37953374 - 37953419
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  37953374 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 37953419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 38701972 - 38701931
Alignment:
Q  298 ggcttaattgcactttggacatctatcttttcaaaagttgcg 339  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  38701972 ggcttaattgcacttttgacccctatcttttcaaaagttgcg 38701931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 41554607 - 41554652
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||    
T  41554607 ggcttaattgcactttcggacctttatcttttcaaaagttgcggtt 41554652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 42866406 - 42866361
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  42866406 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 42866361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 42906372 - 42906417
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||    
T  42906372 ggcttaattgcacttttggacctctatctttccaaaagttgcggtt 42906417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 45106435 - 45106480
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  45106435 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 45106480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 6335333 - 6335377
Alignment:
Q  299 gcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||    
T  6335333 gcttaattgcacttttggacccctatcttttcaaaagttgcggtt 6335377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 6745307 - 6745263
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggt 341  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||    
T  6745307 ggcttaattgcacttttggacccctatcttttcaaaagttgcggt 6745263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 41829775 - 41829733
Alignment:
Q  301 ttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    ||||||||||||| |||| ||||||||||||||||||||||||    
T  41829775 ttaattgcacttttggacctctatcttttcaaaagttgcggtt 41829733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 22194761 - 22194716
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  22194761 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 22194716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 24205294 - 24205339
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  24205294 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 24205339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 24895224 - 24895179
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  24895224 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 24895179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 31784252 - 31784297
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  31784252 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 31784297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 38731279 - 38731324
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  38731279 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 38731324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 39642729 - 39642774
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  39642729 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 39642774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 40493958 - 40493913
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  40493958 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 40493913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 2937101 - 2937057
Alignment:
Q  298 ggcttaattgcactttggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||| ||||||| |||||||||  |||||||||||||    
T  2937101 ggcttaattgcattttggacctctatctttctaaaagttgcggtt 2937057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 79300 - 79255
Alignment:
Q  298 ggcttaattgcacttt-ggacatctatcttttcaaaagttgcggtt 342  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  79300 ggcttaattgcacttttggacccctatcttttcaaaagttgcggtt 79255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University