View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10030_low_12 (Length: 322)

Name: NF10030_low_12
Description: NF10030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10030_low_12
NF10030_low_12
[»] chr7 (8 HSPs)
chr7 (5-245)||(8016972-8017212)
chr7 (26-230)||(8103057-8103261)
chr7 (32-196)||(39986042-39986206)
chr7 (5-165)||(8635982-8636142)
chr7 (38-96)||(8671338-8671396)
chr7 (35-81)||(17268338-17268384)
chr7 (35-132)||(6789911-6790008)
chr7 (38-118)||(8667821-8667901)
[»] chr2 (7 HSPs)
chr2 (83-186)||(17703667-17703770)
chr2 (83-186)||(17717572-17717675)
chr2 (86-195)||(17647644-17647753)
chr2 (110-186)||(17716311-17716387)
chr2 (88-195)||(17666298-17666405)
chr2 (112-195)||(17621560-17621643)
chr2 (89-136)||(17719774-17719821)
[»] chr4 (2 HSPs)
chr4 (1-228)||(54396788-54397015)
chr4 (80-230)||(23596159-23596309)
[»] chr6 (2 HSPs)
chr6 (1-126)||(11161514-11161639)
chr6 (1-126)||(11200257-11200382)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 8017212 - 8016972
Alignment:
Q  5 gcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcac 104  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  8017212 gcattcttcacagttgaaccgaggtaagcttcagcaatctcacgcatctttatgagtaccatagacgaaatttcctcagcagcaaattgcttgtcctcac 8017113  T
Q  105 ccttatagttaacaccaatcattggcttttcaccaggaccagcaatgaccttaaaaggccatagcttcatgtcactctgaactgatgcatcagaaattct 204  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  8017112 ccttgtagttaacaccaatcattggcttttcaccaggaccagcaataaccttaaaaggccacaacttcatgtcactctgaacagatgcatcagaaattct 8017013  T
Q  205 cctgccaatcaaacgctttgcatctgttttatcatacacat 245  Q
    ||| ||||||||||| ||||||||||||| |||| ||||||    
T  8017012 cctaccaatcaaacgttttgcatctgtttgatcaaacacat 8016972  T

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Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 26 - 230
Target Start/End: Original strand, 8103057 - 8103261
Alignment:
Q  26 agataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatca 125  Q
    ||||||||||| |||||||| |||||||| || |  ||||| || || ||||||||||  |||||  | || ||||||||||| ||||||||||||||||    
T  8103057 agataagcttcggcaatctcacgcatcttaatcaaaaccatggatgagatttcctcagacgcaaacagtttttcctcacccttgtagttaacaccaatca 8103156  T
Q  126 ttggcttttcaccaggaccagcaatgaccttaaaaggccatagcttcatgtcactctgaactgatgcatcagaaattctcctgccaatcaaacgctttgc 225  Q
    ||||||||||||||||||| ||||| |||||||||||||| | |||||||||||||||||| || ||||||||||||||||| |||||||| | ||| ||    
T  8103157 ttggcttttcaccaggacccgcaataaccttaaaaggccacaacttcatgtcactctgaacagaagcatcagaaattctcctaccaatcaacctcttggc 8103256  T
Q  226 atctg 230  Q
    |||||    
T  8103257 atctg 8103261  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 196
Target Start/End: Original strand, 39986042 - 39986206
Alignment:
Q  32 gcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggct 131  Q
    ||||| |||||||| |||||||| ||||||||||| || || || || || |||||||||| ||| || ||||| || |||||||||||||| | |||||    
T  39986042 gcttcggcaatctcacgcatcttcattagcaccatggaagagatctcttcggcagcaaattccttatcttcacctttgtagttaacaccaataagtggct 39986141  T
Q  132 tttcaccaggaccagcaatgaccttaaaaggccatagcttcatgtcactctgaactgatgcatca 196  Q
    ||||| | || |||| ||| | |||||||||||| | |||||||||||||||||| || ||||||    
T  39986142 tttcagctggcccagaaataatcttaaaaggccacaacttcatgtcactctgaacagaggcatca 39986206  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 8636142 - 8635982
Alignment:
Q  5 gcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcac 104  Q
    |||||||| |||| |||  | ||||| || ||||||||||||||||||||| | || ||||||||||| |||||||||| |  || |||||| |  ||||    
T  8636142 gcattcttgacagatgattccagatatgcctcagcaatctctcgcatctttgtcaggaccatagacgatatttcctcaggaaaaagttgcttttgttcac 8636043  T
Q  105 ccttatagttaacaccaatcattggcttttcaccaggaccagcaatgaccttaaaaggcca 165  Q
    |||| || || ||| ||||||| || || ||| || |||||||||| |||||||| |||||    
T  8636042 ccttgtatttcacaacaatcatgggtttgtcatcacgaccagcaattaccttaaagggcca 8635982  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 8671396 - 8671338
Alignment:
Q  38 gcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgctt 96  Q
    |||| ||||||||||||| | ||||||||||| || ||||||||||||  |||||||||    
T  8671396 gcaacctctcgcatctttgtaagcaccatagaagatatttcctcagcacaaaattgctt 8671338  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 17268338 - 17268384
Alignment:
Q  35 tcagcaatctctcgcatctttattagcaccatagacgaaatttcctc 81  Q
    ||||||||||| ||||||||| | || ||||||||||||||||||||    
T  17268338 tcagcaatctcccgcatctttgtgagtaccatagacgaaatttcctc 17268384  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 6789911 - 6790008
Alignment:
Q  35 tcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggctt 132  Q
    ||||||||||| ||||||||  | || | ||||||||||| ||||||| ||   | |||||| |||||||||||||| | |||| ||||||| |||||    
T  6789911 tcagcaatctcccgcatcttggtgaggatcatagacgaaacttcctcaacacatagttgcttctcctcacccttatactcaacaacaatcatgggctt 6790008  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 8667821 - 8667901
Alignment:
Q  38 gcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaaca 118  Q
    |||| ||||||||||||| | ||||||||||| || ||||||||||||  ||| ||||| || | |||||| || ||||||    
T  8667821 gcaacctctcgcatctttgtaagcaccatagaagatatttcctcagcacaaaagtgcttctcttgacccttgtacttaaca 8667901  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 17703770 - 17703667
Alignment:
Q  83 gcagcaaattgcttgtcctcacccttatagttaacaccaatcattggcttttcaccaggaccagcaatgaccttaaaaggccatagcttcatgtcactct 182  Q
    |||| ||||||||| || ||||| || ||||||||||||||||||||||| ||| | || |||| ||| | |||||||||||| | |||||| |||||||    
T  17703770 gcagtaaattgcttatcttcaccattgtagttaacaccaatcattggcttatcatccgggccagaaataatcttaaaaggccacaacttcatatcactct 17703671  T
Q  183 gaac 186  Q
    ||||    
T  17703670 gaac 17703667  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 17717675 - 17717572
Alignment:
Q  83 gcagcaaattgcttgtcctcacccttatagttaacaccaatcattggcttttcaccaggaccagcaatgaccttaaaaggccatagcttcatgtcactct 182  Q
    |||||||||||||| || ||||| || ||||| |||||||||||||||||||||||  | |||| ||| | |||||||||||| | |||||| |||| ||    
T  17717675 gcagcaaattgcttatcttcaccattgtagtttacaccaatcattggcttttcacccaggccagaaattatcttaaaaggccacaacttcatatcacact 17717576  T
Q  183 gaac 186  Q
    ||||    
T  17717575 gaac 17717572  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 17647753 - 17647644
Alignment:
Q  86 gcaaattgcttgtcctcacccttatagttaacaccaatcattggcttttca-ccaggaccagcaatgaccttaaaaggccatagcttcatgtcactctga 184  Q
    ||||||||||| || ||||| || ||||||||| ||||||||||||||||| ||||| |||| ||| | |||||||||||| | |||||| |||||||||    
T  17647753 gcaaattgcttatcttcaccattgtagttaacaacaatcattggcttttcatccagg-ccagaaattatcttaaaaggccacaacttcatatcactctga 17647655  T
Q  185 actgatgcatc 195  Q
    || || |||||    
T  17647654 acggaggcatc 17647644  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 17716387 - 17716311
Alignment:
Q  110 tagttaacaccaatcattggcttttcaccaggaccagcaatgaccttaaaaggccatagcttcatgtcactctgaac 186  Q
    ||||||||||||||||||||||||||| | || |||| ||| | |||||||||||| | |||||| |||||||||||    
T  17716387 tagttaacaccaatcattggcttttcatccgggccagaaattatcttaaaaggccacaacttcatatcactctgaac 17716311  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 195
Target Start/End: Complemental strand, 17666405 - 17666298
Alignment:
Q  88 aaattgcttgtcctcacccttatagttaacaccaatcattggcttttcaccaggaccagcaatgaccttaaaaggccatagcttcatgtcactctgaact 187  Q
    ||||||||| || |||||||| ||||||||||||||||| |||||||||   || |||| ||| | |||||| ||||| | |||||| |||||||||||     
T  17666405 aaattgcttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatatcactctgaaca 17666306  T
Q  188 gatgcatc 195  Q
    || |||||    
T  17666305 gaggcatc 17666298  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 17621643 - 17621560
Alignment:
Q  112 gttaacaccaatcattggcttttcaccaggaccagcaatgaccttaaaaggccatagcttcatgtcactctgaactgatgcatc 195  Q
    |||||||||||||| |||||||||| | || |||| ||| | |||||||||||| | |||||| || |||||||| || |||||    
T  17621643 gttaacaccaatcaatggcttttcatccgggccagaaatcatcttaaaaggccacaacttcatatccctctgaacagaggcatc 17621560  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 17719821 - 17719774
Alignment:
Q  89 aattgcttgtcctcacccttatagttaacaccaatcattggcttttca 136  Q
    |||||||| || | |||||| |||||||||||||||||||||||||||    
T  17719821 aattgcttatcattacccttgtagttaacaccaatcattggcttttca 17719774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 54396788 - 54397015
Alignment:
Q  1 aacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcc 100  Q
    ||||||||||||||| |    ||| ||| ||||||||||||  |||| |||||| || | |||||| || ||||||||||| || ||||||| ||| ||     
T  54396788 aacagcattcttcactggatgaccaagaaaagcttcagcaacttctctcatcttgatcaacaccattgaagaaatttcctctgctgcaaatttcttctct 54396887  T
Q  101 tcacccttatagttaacaccaatcattggcttttcaccaggaccagcaatgaccttaaaaggccatagcttcatgtcactctgaactgatgcatcagaaa 200  Q
    ||||| || || |||||| | ||||| || |||||| | ||||| | || ||| ||||| |||||||| ||||||||  | ||||||||| |||| || |    
T  54396888 tcacctttgtaattaacaacgatcataggtttttcagcgggacctggaacgactttaaacggccatagtttcatgtcgttttgaactgattcatcggaga 54396987  T
Q  201 ttctcctgccaatcaaacgctttgcatc 228  Q
     ||| |  ||||| |||||||| |||||    
T  54396988 atctacgaccaattaaacgcttagcatc 54397015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 23596309 - 23596159
Alignment:
Q  80 tcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggcttttcaccaggaccagcaatgaccttaaaaggccatagcttcatgtcac 179  Q
    ||||||| ||||||||| |||||  |||| ||||| ||  | |||||||| || ||| |||| |||| ||||||||| || ||||| |  ||||||||||    
T  23596309 tcagcagaaaattgcttctcctctgccttgtagttcaccacgatcattggtttgtcagcagggccaggaatgaccttgaacggccacaatttcatgtcac 23596210  T
Q  180 tctgaactgatgcatcagaaattctcctgccaatcaaacgctttgcatctg 230  Q
    |||| |||||  ||||    |||| ||| ||||| |||||||| |||||||    
T  23596209 tctgtactgaaacatcgctgattcgcctaccaattaaacgcttggcatctg 23596159  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 11161514 - 11161639
Alignment:
Q  1 aacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcc 100  Q
    |||| ||| |||||| ||||| || || ||||||||||||||||| | ||| ||| | |  ||||| || || ||||| || |||||||| ||||| |||    
T  11161514 aacaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcc 11161613  T
Q  101 tcacccttatagttaacaccaatcat 126  Q
    ||  | |||||||||||| |||||||    
T  11161614 tcgtcattatagttaacaacaatcat 11161639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 11200257 - 11200382
Alignment:
Q  1 aacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcc 100  Q
    |||| ||| |||||| ||||| || || ||||||||||||||||| | ||| ||| | |  ||||| || || ||||| || |||||||| ||||| |||    
T  11200257 aacaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcc 11200356  T
Q  101 tcacccttatagttaacaccaatcat 126  Q
    ||  | |||||||||||| |||||||    
T  11200357 tcgtcattatagttaacaacaatcat 11200382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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