View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10030_low_13 (Length: 320)
Name: NF10030_low_13
Description: NF10030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10030_low_13 |
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| [»] chr5 (11 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 39486923 - 39487224
Alignment:
| Q |
19 |
acgaggtagccatcccaagttttgccaactcgattccaattaactcgttgcccagtttcctgctacacaaggaatatgaatcgtttttcatgaactttgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39486923 |
acgaggtagccatcccaagttttgccaactcgattccaattaactcgttgcccagtttcctgctacacaaggaatatgaatcgtttttcatgaactttgc |
39487022 |
T |
|
| Q |
119 |
cggtggcatcaaaaaagcaaatgccattatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatctagcagaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39487023 |
cggtggcatcaaaaaagcaaatgccattatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatctagcagaa |
39487122 |
T |
|
| Q |
219 |
ttaccggtatatccagtgggacccttattaaaccccgagcccaaaactaagggcaccgatgactctgatgatatcatcaagtggcttgatgatcaacctc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39487123 |
ttaccggtatatccagtgggacccttattaaaccccgagcccaaaactaagggcaccgatgagtctgatgatatcatcaagtggcttgatgatcaacctc |
39487222 |
T |
|
| Q |
319 |
ct |
320 |
Q |
| |
|
|| |
|
|
| T |
39487223 |
ct |
39487224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 27 - 318
Target Start/End: Original strand, 39460713 - 39461007
Alignment:
| Q |
27 |
gccatcccaagttttgccaactcgattccaattaactcgttgcccagtttcctgctacacaaggaatatgaatcgtttttcatgaactttgccggtggca |
126 |
Q |
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||||| |||| ||| ||||||||| |||| || ||||| ||||||||| | ||||| ||||||||| ||||| ||||| ||||||| ||| |||||| |
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| T |
39460713 |
gccataccaactttcgccaactcggttcctatatactcgctgcccagttccatgctaaacaaggaatgggaatccttttttatgaactatgctggtggcc |
39460812 |
T |
|
| Q |
127 |
tcaaaaaagcaaatgccattatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatctagcagaattaccgg- |
225 |
Q |
| |
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|||| |||||||||| |||||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||| |
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| T |
39460813 |
tcaagaaagcaaatggtattatagtaaattcatttgaagagctagaatcccatgcagttcaatcatttttctctcaccctgatctagctagtttaccggt |
39460912 |
T |
|
| Q |
226 |
--tatatccagtgggacccttattaaaccccgagcccaaaactaagggcaccgatgactctgatgatatcatcaagtggcttgatgatcaacctc |
318 |
Q |
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| ||||| | |||||| | ||||||| ||||||||||| ||||| || | || || |||||||||||||||||||||||||||||||||| |
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| T |
39460913 |
tatttatccggcaggacccattataaaccctgagcccaaaaccaagggaacagttggttcagatgatatcatcaagtggcttgatgatcaacctc |
39461007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 39475964 - 39476271
Alignment:
| Q |
19 |
acgaggtagccatcccaagttttgccaactcgattccaattaactcgttgcccagtttcctgctacacaaggaatatgaatcgtttttcatgaactttgc |
118 |
Q |
| |
|
|||||||||||||||| ||||| |||||| | |||| || || ||||||||||| ||||||||||||||| || ||||||||||||| |||| |
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| T |
39475964 |
acgaggtagccatcccgagtttcgccaaccccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggagtcgtttttcatgagacttgc |
39476063 |
T |
|
| Q |
119 |
cggtggcatcaaaaaagcaaatgccattatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatctagcagaa |
218 |
Q |
| |
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| ||| |||| |||| ||||| |||||||||||| |||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||| | || |
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| T |
39476064 |
aagaggcctcaagaaagtaaatggcattatagtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatctatcggat |
39476163 |
T |
|
| Q |
219 |
ttaccggtatatccagtgggacccttattaaaccccgagcccaaaactaagggcac------cgatgactctgatgatatcatcaagtggcttgatgatc |
312 |
Q |
| |
|
||| | ||||||| |||||||| |||||||||| ||||||||||| |||||||| || ||| ||||||||| | || |||||||||||||||| |
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| T |
39476164 |
atactgatatatccggtgggacctttattaaaccttgagcccaaaacaaagggcactgttgacgctgattctgatgatgtaatgaagtggcttgatgatc |
39476263 |
T |
|
| Q |
313 |
aacctcct |
320 |
Q |
| |
|
|||||||| |
|
|
| T |
39476264 |
aacctcct |
39476271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 320
Target Start/End: Complemental strand, 39457890 - 39457709
Alignment:
| Q |
139 |
atgccattatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatctagcagaattaccggtatatccagtggg |
238 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||| |||| ||||| |||||| ||||||||||||||||||||| ||||| ||||||| || || |
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|
| T |
39457890 |
atgccattattgtaaattcatttgaagagctagaatcctatgccgttcactcctttgtctctcatcctgatctagcaggtttacccatatatccggtagg |
39457791 |
T |
|
| Q |
239 |
acccttattaaaccccgagcccaaaactaagggcaccgatgactctgatgatatcatcaagtggcttgatgatcaacctcct |
320 |
Q |
| |
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||| ||||||||||| |||||||||| ||| || || ||| ||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
39457790 |
accaatattaaaccccaagcccaaaaccaagagcgccattgattctgacgatattgtcaagtggcttgatgatcaacctcct |
39457709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 60 - 320
Target Start/End: Complemental strand, 39470433 - 39470173
Alignment:
| Q |
60 |
aactcgttgcccagtttcctgctacacaaggaatatgaatcgtttttcatgaactttgccggtggcatcaaaaaagcaaatgccattatagtaaattcat |
159 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||| | ||||||| ||| ||| ||| |||| || || ||| |||||| || ||||||| |
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| T |
39470433 |
aactcgttgcccagttcagtgctacacaaggaatacaaatccgtcttcatgagcttcgccaaaggcctcaagaatgccgatggcattattgtcaattcat |
39470334 |
T |
|
| Q |
160 |
ttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatctagcagaattaccggtatatccagtgggacccttattaaaccccgagcc |
259 |
Q |
| |
|
|||||||| ||||||| |||| ||||| ||||||||||||||||| || ||||| | ||| | |||||||| | |||||| ||||||||| ||||| |
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|
| T |
39470333 |
ttgaagagctagaatcctatgcggttcactcctttttctctcatcccgaactagctggtttatccatatatccaataggacccatattaaacctagagcc |
39470234 |
T |
|
| Q |
260 |
caaaactaagggcaccgatgactctgatgatatcatcaagtggcttgatgatcaacctcct |
320 |
Q |
| |
|
|||||| |||||||||| ||| ||||| ||||| ||||||||||||||||||| |||||| |
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|
| T |
39470233 |
caaaaccaagggcaccgttgattctgacgatattgtcaagtggcttgatgatcagcctcct |
39470173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 145 - 320
Target Start/End: Complemental strand, 39464146 - 39463971
Alignment:
| Q |
145 |
ttatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatctagcagaattaccggtatatccagtgggaccctt |
244 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| ||||| || ||||| ||| || || |||||| | |||| | ||||||| ||||||||| | |
|
|
| T |
39464146 |
ttatagtaaattcatttgaagagctagaatcccatgcagttcattcatttttatctgatactattctagctggtttacggatatatcctgtgggacccat |
39464047 |
T |
|
| Q |
245 |
attaaaccccgagcccaaaactaagggcaccgatgactctgatgatatcatcaagtggcttgatgatcaacctcct |
320 |
Q |
| |
|
||||||||| ||||||||||| |||| | || ||| | ||||||||||||||||||||||||||||||||||||| |
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|
| T |
39464046 |
attaaacccagagcccaaaaccaaggaccccattgattatgatgatatcatcaagtggcttgatgatcaacctcct |
39463971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 102 - 320
Target Start/End: Original strand, 39483798 - 39484022
Alignment:
| Q |
102 |
tttttcatgaactttgccggtggcatcaaaaaagcaaatgccattatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctc |
201 |
Q |
| |
|
|||||||||| | |||| | ||| |||| |||| ||||| ||||||||||||||||||| ||||| ||||||| || || ||||| || |||||| ||| |
|
|
| T |
39483798 |
tttttcatgagccttgcaagaggcctcaagaaagtaaatggcattatagtaaattcattttaagagctagaatctcacgcggttcactcttttttcactc |
39483897 |
T |
|
| Q |
202 |
atcctgatctagcagaattaccggtatatccagtgggacccttattaaaccccgagcccaaaactaagggcac------cgatgactctgatgatatcat |
295 |
Q |
| |
|
|||| |||||| | || ||| | ||||||| |||||||| ||||||||||| ||||| ||||| |||||||| || ||| ||||||||||| || |
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|
| T |
39483898 |
atccagatctatcggatatacagatatatccggtgggacctttattaaaccctgagcctaaaacaaagggcactgttgacgctgattctgatgatataat |
39483997 |
T |
|
| Q |
296 |
caagtggcttgatgatcaacctcct |
320 |
Q |
| |
|
||||||||| || ||||||||||| |
|
|
| T |
39483998 |
gaagtggcttcataatcaacctcct |
39484022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 317
Target Start/End: Original strand, 39472614 - 39472786
Alignment:
| Q |
145 |
ttatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatctagcagaattaccggtatatccagtgggaccctt |
244 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || || ||||| || ||| ||| |||||| || ||| | ||||| ||||||| || || ||| | |
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|
| T |
39472614 |
ttatagtaaattcatttgaagagctagaatcccacgcagttcactcgatttcatctgatcctggtccagctggtttacctatatatccggtagggcccat |
39472713 |
T |
|
| Q |
245 |
attaaaccccgagcccaaaactaagggcaccgatgactctgatgatatcatcaagtggcttgatgatcaacct |
317 |
Q |
| |
|
| | |||| ||||||||||| |||||||||| ||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
39472714 |
actgaacctggagcccaaaaccaagggcaccgttgattccgatgacatcatcaagtggcttgatgatcaacct |
39472786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 39451582 - 39451647
Alignment:
| Q |
143 |
cattatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctga |
208 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| || ||||| ||||||||| ||||||||| |
|
|
| T |
39451582 |
cattatagtaaattcatttgaagagctagaatcacacgcggttcactcctttttcaatcatcctga |
39451647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 39455213 - 39455274
Alignment:
| Q |
147 |
atagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctga |
208 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||||| ||||| |||||||||||||||||||| |
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|
| T |
39455213 |
atagtaaattcatttgaagatcttgaatctcatgcggttcactcctttttctctcatcctga |
39455274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 287 - 318
Target Start/End: Original strand, 39455353 - 39455384
Alignment:
| Q |
287 |
tgatatcatcaagtggcttgatgatcaacctc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39455353 |
tgatatcatcaagtggcttgatgatcaacctc |
39455384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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