View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10030_low_17 (Length: 301)

Name: NF10030_low_17

Description: NF10030

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10030_low_17

[»] chr8 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 178; E-Value: 5e-96

Query Start/End: Original strand, 7 - 281

Target Start/End: Original strand, 38504463 - 38504733

Alignment:

Q	7	tgttaacgggttatgaaatcaacttaattgtggt---tgagtctgaataatacaagtaaacaacaacttcgaaataccaaactcccaaaccactatttcc	103	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	38504463	tgttaacatgttatgaaatcaacttaattgtggtctttgagtttgaataacacaagtacacagcaactccgaaataccaaactcccaggccactatttcc	38504562	T

Q	104	atgatataccatcaataattccacatggaggatgttggagaatcctatattacccacaaactcatggaaccaagcatcatcagaatttcgaatcaattcc	203	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38504563	atgatata-------taattccacatggaggatgttggagaatcctatattacccacaaactcatggaaccaagcaccatcagaatttcgaatcaattcc	38504655	T

Q	204	ccaaagcttgaaatattagggttatcgaggctacttccatcaacattcaagatcatttcaataccactatgatcgttc	281	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	38504656	ccaaagtttgaaatactagggttatcgaggctactcccatcaacattcaagatcatttcaataccatcatgatcgttc	38504733	T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 31; E-Value: 0.00000003

Query Start/End: Original strand, 102 - 180

Target Start/End: Complemental strand, 25786021 - 25785943

Alignment:

Q	102	ccatgatataccatcaataattccacatggaggatgttggagaatcctatattacccacaaactcatggaaccaagcat	180	Q
		\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	25786021	ccatgataaactaccaataatcctacatggaggatgttagaaaagcctatattaccggcaaaatcatggacccaagcat	25785943	T

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