View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10030_low_19 (Length: 281)
Name: NF10030_low_19
Description: NF10030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10030_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 47713547 - 47713259
Alignment:
| Q |
1 |
tgaaggtttctacgccgctgctctttggtttcaccactgccaccctaaaaccctagcttctaacgtcccttcccttgctgaatttggttacttcaaagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47713547 |
tgaaggtttctacgccgctgctctttggtttcaccactaccaccctaaaaccctagcttctaacgtcccttcccttgctgactttggttacttcaaagat |
47713448 |
T |
|
| Q |
101 |
ctcccagaaatcctttaccgtcttctgcaaggtaccaatatacgtaaaatccagaaagaagaatggaatcaaaagaaattagcagcctacagnnnnnnnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47713447 |
ctcccagaaatcctttaccgtcttctgcaaggtaccaatatacgtaaaatccagaaagaagaatggaatcaaaagaaattagcagcctacagaaaaaaaa |
47713348 |
T |
|
| Q |
201 |
ntcgcaaatc------------------aaaaacccgttttggtgttagaaaattcgatcaagaacaatgggagtttaaaccccctttg |
271 |
Q |
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||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47713347 |
atcgcaaatcaaagtcaaaatcaaaatcaaaaacccgctttggtgtaagaaaattcgatcaagaacaatgggagtttaaaccccctttg |
47713259 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 19796494 - 19796370
Alignment:
| Q |
2 |
gaaggtttctacgccgctgctctttggtttcaccactgccaccctaaaaccctagcttctaacgtcccttcccttgctgaatttggttacttcaaagatc |
101 |
Q |
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||||| ||||||||||| ||||| |||||||| | |||||||||||||||||| | || || ||||| || ||||| ||||| ||||||||||||| |
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| T |
19796494 |
gaaggcttctacgccgccgctctctggtttcatgaaaatcaccctaaaaccctagctaccaatgttccttctctcgctgactttggctacttcaaagatc |
19796395 |
T |
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| Q |
102 |
tcccagaaatcctttaccgtcttct |
126 |
Q |
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|||| || ||||| ||||||||||| |
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| T |
19796394 |
tccctgagatcctctaccgtcttct |
19796370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 19785180 - 19785285
Alignment:
| Q |
74 |
cttgctgaatttggttacttcaaagatctcccagaaatcctttaccgtcttctgcaaggtaccaatatacgtaaaatccagaaagaagaatggaatcaaa |
173 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| || |||||| |||| |||||| | || ||| |||||||||||||||| |||||| ||| |
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| T |
19785180 |
cttgctgactttggttacttcaaagatctccctgaaattctataccgtattctccaaggttctggaattcgtgaaatccagaaagaagagtggaatgaaa |
19785279 |
T |
|
| Q |
174 |
agaaat |
179 |
Q |
| |
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||||| |
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| T |
19785280 |
ggaaat |
19785285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 15835693 - 15835608
Alignment:
| Q |
41 |
caccctaaaaccctagcttctaacgtcccttcccttgctgaatttggttacttcaaagatctcccagaaatcctttaccgtcttct |
126 |
Q |
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|||||||||||||||||| | || || |||| | |||| ||||||||||||||||||||||| || ||||| ||||||||||| |
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| T |
15835693 |
caccctaaaaccctagctaccaatgtttcttcattcgctgcctttggttacttcaaagatctccctgagatcctctaccgtcttct |
15835608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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