View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10030_low_2 (Length: 627)
Name: NF10030_low_2
Description: NF10030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10030_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 17 - 611
Target Start/End: Original strand, 51550702 - 51551293
Alignment:
| Q |
17 |
catcacagaataatcatgccataaaactcgtgtttgaacaaaactctttagtttaatgaatttaatgttatcttgcttccacagtgtcactctcgtgcag |
116 |
Q |
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| T |
51550702 |
catcacagaataatcatgccataaaactcgtgtttgaacaaaactctttagtttaatgaatttaatgttatcttgcttccacagtgtcactctcgtgcag |
51550801 |
T |
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| Q |
117 |
ttaaagtctatggttagtttctttttctaatgctatagtattttcttccatatcaatatata--aaactaactgaattcacaaaacgtgttagatagata |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
51550802 |
ttaaagtctatggttagtttctttttctaatgctatagtattttcttccatatcaatatatataaaactaactgaattcacaaaacgtgttagataga-a |
51550900 |
T |
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| Q |
215 |
ctaaaacaaacaacaaacacactcacatatagtct-accccacattagagaagtgaaaccaaaccagcagccatgtttgaatttacgcaacaacaacttt |
313 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51550901 |
ctaaaacaaacaacaaacacactcacatatagtcttaccccacattagagaagtgaaaccaaaccagcagccatgtttgaatttacgcaacaacaacttt |
51551000 |
T |
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| Q |
314 |
aataaccatcatttcccggcaaatacaccgaaaccgtttcttcataatgtccaaactacccctttccatatcaaaattcccattttctatcttcttcctt |
413 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51551001 |
aa---ccatcatttcccggcaaatac--cgaaaccgtttcttcataatgtccaaactacccctttccatatcaaaattcccattttctatcttcttcctt |
51551095 |
T |
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| Q |
414 |
ctaaccttcataatacccttcaaagtaatttcacaaaccacaaccaccgaacaaacaatccttctcaatcttaaacgtcaacttaataatccaccgtcgc |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51551096 |
ctaaccttcataatacccttcaaagtaatttcacaaaccacaaccaccgaacaaacaatccttctcaatcttaaacgtcaacttaataatccaccgtcgc |
51551195 |
T |
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| Q |
514 |
ttgaatcatggaaaccgtcgctatcttcgccgtgcaattggccggagatcaattgcaccggcggcactgtgacggagcttctcctcttaaacaaaaac |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51551196 |
ttgaatcatggaaaccgtcgctatcttcgccgtgcaattggccggagatcaattgcaccggcggcactgtgacggagcttctcctcttaaacaaaaac |
51551293 |
T |
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