View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10030_low_27 (Length: 239)

Name: NF10030_low_27
Description: NF10030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10030_low_27
NF10030_low_27
[»] chr4 (3 HSPs)
chr4 (1-218)||(48912119-48912336)
chr4 (5-218)||(48958332-48958545)
chr4 (9-166)||(48965566-48965723)
[»] scaffold0536 (2 HSPs)
scaffold0536 (3-218)||(6287-6502)
scaffold0536 (1-215)||(10269-10481)
[»] chr6 (2 HSPs)
chr6 (1-218)||(12589943-12590160)
chr6 (1-218)||(12483238-12483455)
[»] chr2 (2 HSPs)
chr2 (53-218)||(13440385-13440550)
chr2 (91-217)||(13448549-13448675)
[»] chr7 (1 HSPs)
chr7 (31-218)||(3417334-3417521)
[»] chr5 (1 HSPs)
chr5 (53-176)||(28385561-28385684)
[»] chr8 (1 HSPs)
chr8 (99-218)||(12641353-12641472)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 48912119 - 48912336
Alignment:
Q  1 agagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcgga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48912119 agagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccaatgtcatttttcgga 48912218  T
Q  101 taaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48912219 taaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagaatgacaatgaagag 48912318  T
Q  201 gagaaagaaaaatggttg 218  Q
    ||||||||||||||||||    
T  48912319 gagaaagaaaaatggttg 48912336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 48958545 - 48958332
Alignment:
Q  5 tgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaa 104  Q
    |||||| |||||||| |  ||| |||||||||| |||| |||   | ||||||| ||| ||||||||||||||||||||  |||| |||| || ||||||    
T  48958545 tgttgttagtgtgcatggttgtctgagttggctcaacttgaagagacataactcagtgttgtacatatgctttggaagcatatgttatttatctgataaa 48958446  T
Q  105 caactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggaga 204  Q
    |||||||||||||||||||| ||||| ||||||||  ||||||||||  |||||||||||||||| |||||| |||  ||  | || | |||||||||||    
T  48958445 caactttatgagattgcgtgtgggatagaagcatcaggtcacgaatttgtatgggttgttcctgagaagaaagggaaagaagacgagagtgaagaggaga 48958346  T
Q  205 aagaaaaatggttg 218  Q
    ||| ||| ||||||    
T  48958345 aaggaaagtggttg 48958332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 48965723 - 48965566
Alignment:
Q  9 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaac 108  Q
    ||||| ||||| ||||||||||||||||| || || || | | ||||||| ||| |||||||| ||||||||||||  |||| || |  ||||||||| |    
T  48965723 gtgagcgtgcaagagtgtttgagttggctcaattccaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaacagc 48965624  T
Q  109 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcc 166  Q
    |||||||||||||||| |  || ||||||||| |||| || || ||||||||| ||||    
T  48965623 tttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattcc 48965566  T

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Target: scaffold0536 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 6287 - 6502
Alignment:
Q  3 agtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggata 102  Q
    ||||||||||||||||| |||||| ||||||||||  ||||||| | ||||||||| ||| ||||||||||||||||||||  ||| | |||  ||||||    
T  6287 agtgttgtgagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggata 6386  T
Q  103 aacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagagga 202  Q
    |||||||||| |||||||| || ||||| ||||||||| ||||| |||||||||||||||||||||| |||||| |||  ||  |||| | |||||||||    
T  6387 aacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcctgagaagaaagggaaagaagatgagagtgaagagga 6486  T
Q  203 gaaagaaaaatggttg 218  Q
    ||||| ||||||||||    
T  6487 gaaaggaaaatggttg 6502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 10269 - 10481
Alignment:
Q  1 agagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcgga 100  Q
    ||||||||||||||||||| |||||| ||||||||||||||| ||| | |||||  || ||| ||||||| ||||||||||||| |||| ||||||| ||    
T  10269 agagtgttgtgagtgtgcatgagtgtctgagttggcttaacttgaagcgagata--tcagtgttgtacatttgctttggaagcctatgttatttttcaga 10366  T
Q  101 taaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagag 200  Q
    ||||||||||||||||||||||||| || | ||||||||| || |||||||  |||| ||||||||||| |||||| |||  ||| |||| | | |||||    
T  10367 taaacaactttatgagattgcgtgcagggtagaagcatcgggttacgaatttgtatgagttgttcctgagaagaaagggaaagagaatgagagtcaagag 10466  T
Q  201 gagaaagaaaaatgg 215  Q
    |||||||||||||||    
T  10467 gagaaagaaaaatgg 10481  T

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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 12589943 - 12590160
Alignment:
Q  1 agagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcgga 100  Q
    ||||||||||||  ||||| |||||| |||||||||| |||||||| | ||||||||| ||| |||||||||||||||| |||  |||  |||| || ||    
T  12589943 agagtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagcatatgctatttctcaga 12590042  T
Q  101 taaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagag 200  Q
    ||||||||||||||||||| |||| || || ||||||||  | ||||||||| |||||||| |||| || || ||| ||| |||  |||| | ||| |||    
T  12590043 taaacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcccgagaaaaaagggaaggaagatgagagtgatgag 12590142  T
Q  201 gagaaagaaaaatggttg 218  Q
    || ||| |||||||||||    
T  12590143 gataaacaaaaatggttg 12590160  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 12483238 - 12483455
Alignment:
Q  1 agagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcgga 100  Q
    ||||||||||||| ||||| ||||||   |||||||| ||||| || ||||| || || ||| |||||||||||||||| |||| |||  |||| || ||    
T  12483238 agagtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcctatgcaatttctctga 12483337  T
Q  101 taaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagag 200  Q
    |||||| ||||| || ||| | ||||| || ||||||||| || |  |||||||||||||||||||||| || ||| ||| |||  |||| |  || |||    
T  12483338 taaacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcctgagaaaaaagggaaggaagatgagagcgatgag 12483437  T
Q  201 gagaaagaaaaatggttg 218  Q
    ||||||||||| ||||||    
T  12483438 gagaaagaaaagtggttg 12483455  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 218
Target Start/End: Complemental strand, 13440550 - 13440385
Alignment:
Q  53 taactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 152  Q
    |||||||||| |||||||||| |||||||||       |||| || ||||||||||| |||||||| |||||||  || |||||||| ||||||  ||||    
T  13440550 taactcggtgttgtacatatgttttggaagcatcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattc 13440451  T
Q  153 atatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttg 218  Q
    ||||||||||||||||| |||||| |||  ||  |||| | ||| || ||||||||||| ||||||    
T  13440450 atatgggttgttcctgagaagaaagggaaagaagatgagagtgaggaagagaaagaaaagtggttg 13440385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 13448675 - 13448549
Alignment:
Q  91 atttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatga 190  Q
    ||||||| ||||||||||| || ||||| || || | ||| ||||||||  |||||  ||||||||||||||||||||| |||||| |||  ||  ||||    
T  13448675 atttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaagaagatga 13448576  T
Q  191 caatgaagaggagaaagaaaaatggtt 217  Q
     |  ||||| ||||||||||| |||||    
T  13448575 gagcgaagaagagaaagaaaagtggtt 13448549  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 218
Target Start/End: Original strand, 3417334 - 3417521
Alignment:
Q  31 gttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggat 130  Q
    ||||||| |||||  |||||| |||||| ||| |||||||||| |||||||||  |    |||| || ||||||||||| ||||||||||| | ||  ||    
T  3417334 gttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttaaactatttctctgataaacaactatatgagattgcatacgcaat 3417433  T
Q  131 tgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttg 218  Q
     ||||||||| |||||  ||||||||||||||||| ||| |||||| | |  ||  |||| || ||||| ||||||||||| ||||||    
T  3417434 agaagcatcgggtcacccattcatatgggttgttcttgagaagaaaggaaaagaagatgagaacgaagaagagaaagaaaagtggttg 3417521  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 28385684 - 28385561
Alignment:
Q  53 taactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 152  Q
    |||||| || ||||||||||| |||||||||  |   ||||| || ||||||||||| ||||||||||| ||||   | ||||||||  |||||  ||||    
T  28385684 taactcagttgtgtacatatgttttggaagcataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattc 28385585  T
Q  153 atatgggttgttcctgaaaagaaa 176  Q
    ||||||||||||||||| ||||||    
T  28385584 atatgggttgttcctgagaagaaa 28385561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 218
Target Start/End: Original strand, 12641353 - 12641472
Alignment:
Q  99 gataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaag 198  Q
    |||||||||||||| ||||||||| |||| || |||   ||  ||||||||||  |||||||||||||||| |||||| |||   |  |||| | |||||    
T  12641353 gataaacaactttacgagattgcgagcggaatagaaaattcaggtcacgaatttgtatgggttgttcctgagaagaaagggaaaaaagatgagagtgaag 12641452  T
Q  199 aggagaaagaaaaatggttg 218  Q
    ||||||||||||| ||||||    
T  12641453 aggagaaagaaaagtggttg 12641472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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