View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10030_low_29 (Length: 237)
Name: NF10030_low_29
Description: NF10030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10030_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 49353437 - 49353659
Alignment:
| Q |
1 |
tcttcttgtggaaatctaaagtctatgccacttcacgttattcccaacttagagtggttgttcattactaattgccctaagttgaaattgtcattccaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| |
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| T |
49353437 |
tcttcttgtggaaatctaaagtctatgccacttcacgttattcccaacttagagtggttgttcattactaattgccataagttgaaattttcatttcaca |
49353536 |
T |
|
| Q |
101 |
atgagaaccaaatcccaaagttaaagctgaagttgctaagtcttgaatctttgccacaacttgtgagttttcctgaatggttgaaaggatgtgccgacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49353537 |
atgagaaccaaatcccaaagttaaagctgaagttgctaagtcttgaatctttgccacaacttgtgagttttcctgaatggttgaaaggatgtgccgacac |
49353636 |
T |
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| Q |
201 |
attaaacaccttggtaattgatg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
49353637 |
attaaacaccttggtaattgatg |
49353659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 19031032 - 19031133
Alignment:
| Q |
112 |
atcccaaagttaaagctgaagttgctaagtcttgaatctttgccacaacttgtgagttttcctgaatggttgaaaggatgtgccgacacattaaacacct |
211 |
Q |
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||||| |||||||| ||||||||||||| ||||| |||||||||| ||||||||||| ||||| |||||||| |||||| || |||||||||| |||||| |
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| T |
19031032 |
atcccgaagttaaaactgaagttgctaaatcttgtatctttgccaaaacttgtgagtattcctaaatggttgcaaggatctgtcgacacattacacacct |
19031131 |
T |
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| Q |
212 |
tg |
213 |
Q |
| |
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|| |
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| T |
19031132 |
tg |
19031133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 49342162 - 49342229
Alignment:
| Q |
156 |
acaacttgtgagttttcctgaatggttgaaaggatgtgccgacacattaaacaccttggtaattgatg |
223 |
Q |
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| T |
49342162 |
acaacttgtgagttttccgcaatggttgcaaggatgtgcagacacattacaaaccttggtaattgatg |
49342229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 32782830 - 32782613
Alignment:
| Q |
3 |
ttcttgtggaaatctaaagtctatgccacttcacgttattcccaacttagagtggttgttcattactaattgccctaagttgaaattgtcattccacaat |
102 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32782830 |
ttcttgtgggaatctaaagtctatgccacttcatgttattcccaacttagagtggttgttcattactaattgccataagttgaaattgtcattccacaat |
32782731 |
T |
|
| Q |
103 |
gagaaccaaatcccaaagttaaagctgaagttgctaagtcttgaatctttgccacaacttgtgagttttcctgaatggttgaaaggatgtgccgacacat |
202 |
Q |
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|| ||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| ||||| |||||||| ||| |||||| || |||| |
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| T |
32782730 |
gacaaccaaatcccaaagtttaagctgaagttgctaactcttcgatctttgccacaacttgtgagtattcctaaatggttgcaagaatgtgcggatacat |
32782631 |
T |
|
| Q |
203 |
taaacaccttggtaattg |
220 |
Q |
| |
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|| | ||||||| ||||| |
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| T |
32782630 |
tacagaccttggcaattg |
32782613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 29751965 - 29752026
Alignment:
| Q |
143 |
ttgaatctttgccacaacttgtgagttttcctgaatggttgaaaggatgtgccgacacatta |
204 |
Q |
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||||||||||||||||| | ||||||||||| |||||||| |||||||||| ||||||||| |
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| T |
29751965 |
ttgaatctttgccacaattgttgagttttcctcaatggttgcaaggatgtgcggacacatta |
29752026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 29744906 - 29744988
Alignment:
| Q |
130 |
aagttgctaagtcttgaatctttgccacaacttgtgagttttcctgaatggttgaaaggatgtgccgacacattaaacacctt |
212 |
Q |
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||||| ||| || |||| |||||||||||| | ||||||||||| ||| ||| |||||||||| ||||||||| ||||||| |
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| T |
29744906 |
aagttactatgtattgattctttgccacaattgttgagttttcctcaatcattgcaaggatgtgcagacacattacacacctt |
29744988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 29601329 - 29601268
Alignment:
| Q |
143 |
ttgaatctttgccacaacttgtgagttttcctgaatggttgaaaggatgtgccgacacatta |
204 |
Q |
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||||||| |||||| || | ||||||||||| |||||||| |||||||||| ||||||||| |
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| T |
29601329 |
ttgaatccttgccagaattgttgagttttcctcaatggttgcaaggatgtgcggacacatta |
29601268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 29744791 - 29744880
Alignment:
| Q |
3 |
ttcttgtggaaatctaaagtctatgccacttcacgttattcccaacttagagtggttgttcattactaattgccctaagttgaaattgtc |
92 |
Q |
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||||||| | |||||||||||| |||||||||| |||||||| ||||| || | ||||| ||| ||||||| ||| ||||||||||| |
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| T |
29744791 |
ttcttgtaggaatctaaagtctttgccacttcatgttattccaaacttggatagtttgtttattgataattgcaataatttgaaattgtc |
29744880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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