View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10030_low_3 (Length: 606)
Name: NF10030_low_3
Description: NF10030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10030_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 19 - 588
Target Start/End: Original strand, 34859512 - 34860081
Alignment:
| Q |
19 |
cacagacagaagaaaggtgtatgtcaacatcaggactcatgtacccgaaaagctacttcaaattaacagtgaaactagaacagtacaggcaactaatgat |
118 |
Q |
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| T |
34859512 |
cacagacagaagaaaggtgtatgtcaacatcaggactcatgtacccgaaaagctagttcaaattaacagtgaaactagaacagtacaggcaactaatgat |
34859611 |
T |
|
| Q |
119 |
cataacaagctaaaggtgtatctgtacttctcagctccagttctaaattcatctacagaaatcatgaattctctcaaagttagccagggttcactccttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34859612 |
cataacaagctaaaggtgtatctgtacttctcagctccagttctaaattcatctacagaaatcatgaattctctcaaagttagccagggttcactccttc |
34859711 |
T |
|
| Q |
219 |
caactagtgcagaaaatcttggaaatcgtagatttgggttcatggttagttaattcataaatgtagtatgttttggtctcttagttgtgttgtgttatgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34859712 |
caactagtgcagaaaatcttggaaatcgtagatttgggttcatggttagttaattcataaatgtagtatgttttagtctcttagttgtgttgtgttatgc |
34859811 |
T |
|
| Q |
319 |
ttgtttcaagtgcatctcttctccttacacatcattttttggttaactgttattgtagattgccaatatctcctccactgctataatctcggttaacttc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34859812 |
ttgtttcaagtgcatctcttctccttacacatcattttttggttaactgttattgtagattgccaatatctcctccactgctataatctcggttaacttc |
34859911 |
T |
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| Q |
419 |
aattcgaagtcaataataaccagacaaggaactcaagtttctccaaatgctccggttaattttctatatggtacatgttaatgatgttatccaccaagta |
518 |
Q |
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| T |
34859912 |
aattcgaagtcaataataaccagacaagggactcaagtttctccaaatgccccggttaattttctatatggtacatgttaatgatgttatccaccaagta |
34860011 |
T |
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| Q |
519 |
aagattgtctgtatttacatgctaacattttcatggaattcagattctaagagacctgcggtgatgttga |
588 |
Q |
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| T |
34860012 |
aagattgtttgtatttacatgctaacattttcatggaattcagattctaagagacctgcggtgatgttga |
34860081 |
T |
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