View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10030_low_30 (Length: 235)
Name: NF10030_low_30
Description: NF10030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10030_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 29219336 - 29219137
Alignment:
| Q |
17 |
cagagattcttctgcactaggttgatattatttttattaatctggtgcttaagtatggtttgggtaggaaaaaggcatttagaaactagaatcggtgcaa |
116 |
Q |
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| T |
29219336 |
cagagattcttttgcactaggttgatattatttttattaatctggtgcttaagtatggtttgggtaggaaagaggcatttagaaactagaatcggtgcaa |
29219237 |
T |
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| Q |
117 |
atatgataagtgttggaaacttaggaaatgattacaatgttcttaacatgaagaaactgagatatagcaagtaaatttgttcatagttcatattactatg |
216 |
Q |
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| T |
29219236 |
atatgataagtgttggaaactaagcaaatgattacaatgttcttaacatgatgaaactgagatatagcaagtaaatttgttcatagttcatattactatg |
29219137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 590672 - 590560
Alignment:
| Q |
74 |
gtttgggtaggaaaaaggcatttagaaactagaatcggtgcaaatatgataagtgttggaaacttaggaaatgattacaatgttcttaacatgaagaaac |
173 |
Q |
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| T |
590672 |
gtttgggtaggaaaaaggcatttagaaatttgaatgggtgcaaatac--taagtgttggaaacttaggaaatgattattatattcttaacatgaaggaac |
590575 |
T |
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| Q |
174 |
tgagatatagcaagt |
188 |
Q |
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| T |
590574 |
tgagatatagcaagt |
590560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 183683 - 183780
Alignment:
| Q |
48 |
ttttattaatctggtgcttaagtatggtttgggtaggaaaaaggcatttagaaactagaatcggtgcaaatatgataagtgttggaaacttaggaaatga |
147 |
Q |
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| T |
183683 |
ttttattgatttggtactaaagtatggtttgggtaggaaaatggctttaagaaatttgaacgagcgcaaata--ataagtgttggaaacataggacatga |
183780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 44628455 - 44628539
Alignment:
| Q |
126 |
gtgttggaaacttaggaaatgattacaatgttcttaacatgaagaaactgagatatagcaagtaaatttgttcatagttcatatt |
210 |
Q |
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| T |
44628455 |
gtgttagaagcttgggaaatgattatgagattcttaacatgaaggaaccgagttatagcaagtatagttgttcatagctcatatt |
44628539 |
T |
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