View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10030_low_32 (Length: 204)

Name: NF10030_low_32
Description: NF10030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10030_low_32
NF10030_low_32
[»] chr1 (2 HSPs)
chr1 (11-183)||(46594828-46595000)
chr1 (34-148)||(32774127-32774241)
[»] chr8 (5 HSPs)
chr8 (11-177)||(37269813-37269980)
chr8 (32-178)||(36404034-36404180)
chr8 (11-131)||(42941188-42941308)
chr8 (72-124)||(8273845-8273897)
chr8 (34-150)||(9936367-9936483)
[»] scaffold0760 (1 HSPs)
scaffold0760 (11-148)||(1722-1859)
[»] chr6 (5 HSPs)
chr6 (27-168)||(1034263-1034405)
chr6 (26-128)||(10232725-10232827)
chr6 (55-171)||(2920913-2921029)
chr6 (38-171)||(18246523-18246656)
chr6 (70-148)||(32548918-32548995)
[»] scaffold0495 (1 HSPs)
scaffold0495 (26-128)||(9448-9550)
[»] chr3 (3 HSPs)
chr3 (70-172)||(53553627-53553728)
chr3 (38-171)||(1259270-1259403)
chr3 (38-171)||(37242558-37242691)
[»] chr4 (3 HSPs)
chr4 (38-171)||(16989581-16989714)
chr4 (34-150)||(2282214-2282330)
chr4 (43-111)||(4913390-4913458)
[»] chr2 (3 HSPs)
chr2 (78-155)||(33858647-33858724)
chr2 (71-124)||(1479469-1479522)
chr2 (31-116)||(11272498-11272583)
[»] chr7 (3 HSPs)
chr7 (38-122)||(31234771-31234855)
chr7 (34-150)||(42460099-42460215)
chr7 (16-77)||(21245264-21245325)
[»] chr5 (1 HSPs)
chr5 (40-124)||(36989006-36989090)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 46595000 - 46594828
Alignment:
Q  11 aagcaaaggatgtttatgagattgtggatgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| |||||    
T  46595000 aagcaaaggatgtttatgagattgtggatgaaattaaagtggtgtcttggttttgggtattgagtagacttaacatagcttcctttctcttttacgagtg 46594901  T
Q  111 gacttgaaatcctaaagaatggttaaataggagatgaaagtggctttctttttggatctgctgtagggtctct 183  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46594900 gacttgaaatcctaaagaatgtttaaataggagatgaaagtggctttctttttggatctgctgtagggtctct 46594828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 32774241 - 32774127
Alignment:
Q  34 gtggatgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatcctaaagaatggt 133  Q
    |||||||| || |||| ||| |||||| |||||   ||||||||||| |||||||| || ||||||||||||||||||||||| ||||||| ||| ||      
T  32774241 gtggatgagatcaaagcggtttcttgggtttggacgttgagtagattaaagatagcctcattcctcttttatgagtggacttggaatcctagagagtgcc 32774142  T
Q  134 taaataggagatgaa 148  Q
    ||||||| |||||||    
T  32774141 taaatagaagatgaa 32774127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 2e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 37269980 - 37269813
Alignment:
Q  11 aagcaaaggatgtttatgagattgtggatgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtg 110  Q
    |||| ||||||||  ||||||||||||| ||||| |||||  | |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  37269980 aagcgaaggatgtggatgagattgtggaggaaatcaaagttatatcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtg 37269881  T
Q  111 gacttgaaatcctaaagaatggttaaataggagatgaaagtggctttc-tttttggatctgctgtagg 177  Q
    |||||| ||||||| ||||||  | ||||| |||||||   |||| || |||||||||||||| ||||    
T  37269880 gacttggaatcctagagaatgtcttaatagaagatgaagccggctgtcttttttggatctgctatagg 37269813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 32 - 178
Target Start/End: Complemental strand, 36404180 - 36404034
Alignment:
Q  32 ttgtggatgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatcctaaagaatg 131  Q
    ||||| ||||||| |||||||| |||||||||||||  ||||||||| |||||||||||||||||||||| || ||||||||||| ||||||| ||||||    
T  36404180 ttgtgaatgaaatcaaagtggtatcttggttttgggcgttgagtagacttaagatagcttccttcctcttctacgagtggacttggaatcctagagaatg 36404081  T
Q  132 gttaaataggagatgaaagtggctttctttttggatctgctgtaggg 178  Q
     |||||||| ||||||| ||| || | ||||| | |||||| |||||    
T  36404080 tttaaatagaagatgaaggtgactgtttttttagctctgctataggg 36404034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 42941188 - 42941308
Alignment:
Q  11 aagcaaaggatgtttatgagattgtggatgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtg 110  Q
    |||| ||||||||  ||||||||||||| ||||| |||||  | ||||||||| |||| ||||||||| | |||||||||||||||||||||||||||||    
T  42941188 aagcgaaggatgtggatgagattgtggaggaaatcaaagttttatcttggtttggggtgttgagtagactaaagatagcttccttcctcttttatgagtg 42941287  T
Q  111 gacttgaaatcctaaagaatg 131  Q
    |||||| ||||||| ||||||    
T  42941288 gacttggaatcctagagaatg 42941308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 8273845 - 8273897
Alignment:
Q  72 gagtagatttaagatagcttccttcctcttttatgagtggacttgaaatccta 124  Q
    ||||||||| ||||||||||| ||||||||||||||||||| ||| |||||||    
T  8273845 gagtagattaaagatagcttctttcctcttttatgagtggatttggaatccta 8273897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 9936367 - 9936483
Alignment:
Q  34 gtggatgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatcctaaagaatggt 133  Q
    |||||||| ||| ||| |||||||||| | ||| | ||||| ||| | |||||||| || ||||||||||||||||||||||| || |||| | | ||      
T  9936367 gtggatgagattgaagcggtgtcttgggtgtggatgttgagcagactaaagatagcatcgttcctcttttatgagtggacttggaaccctagacagtgcc 9936466  T
Q  134 taaataggagatgaaag 150  Q
    ||||||| |||||||||    
T  9936467 taaatagaagatgaaag 9936483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 1859 - 1722
Alignment:
Q  11 aagcaaaggatgtttatgagattgtggatgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtg 110  Q
    |||| ||||||||  ||||||||||||| ||||| |||||  | |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  1859 aagcgaaggatgtggatgagattgtggaggaaatcaaagttatatcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtg 1760  T
Q  111 gacttgaaatcctaaagaatggttaaataggagatgaa 148  Q
    |||||| ||||||| ||||||  | ||||| |||||||    
T  1759 gacttggaatcctagagaatgtcttaatagaagatgaa 1722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 27 - 168
Target Start/End: Original strand, 1034263 - 1034405
Alignment:
Q  27 tgagattgtggatgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatcctaaa 126  Q
    |||||| |||||||| ||||||| ||| |||||| |||||   ||||||||||| |||||||| || ||||||||||||||||||||||| |||||||||    
T  1034263 tgagatagtggatgagattaaagcggtttcttgggtttggacgttgagtagattaaagatagcatcgttcctcttttatgagtggacttggaatcctaaa 1034362  T
Q  127 gaatggttaaata-ggagatgaaagtggctttctttttggatc 168  Q
    || ||  |||||| |||||||||||  ||| ||||||||||||    
T  1034363 gagtgcctaaatagggagatgaaaggtgctgtctttttggatc 1034405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 10232725 - 10232827
Alignment:
Q  26 atgagattgtggatgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatcctaa 125  Q
    |||| |||||||||||||||||||||||| ||| |||||| |  ||||||||| | ||||||||||| ||||||||||||||||||| ||| |||| |||    
T  10232725 atgaaattgtggatgaaattaaagtggtgacttagttttgagctttgagtagactgaagatagcttctttcctcttttatgagtggatttggaatcttaa 10232824  T
Q  126 aga 128  Q
    |||    
T  10232825 aga 10232827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 2921029 - 2920913
Alignment:
Q  55 tcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatcctaaagaatggttaaataggagatgaaagtggc 154  Q
    |||||| ||||| | |||||||| || ||||||||||| |||||||||||||||||||| || |||||   ||||||  |||| || ||||||| |||||    
T  2921029 tcttgggtttggatgttgagtaggttaaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaagatgaacgtggc 2920930  T
Q  155 tttctttttggatctgc 171  Q
    |||||||||| ||||||    
T  2920929 tttctttttgaatctgc 2920913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 171
Target Start/End: Complemental strand, 18246656 - 18246523
Alignment:
Q  38 atgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatcctaaagaatggttaaa 137  Q
    |||||||||||| | | |||||| ||||| | |||||||| || ||||||||||| |||||||| ||||||||||| || |||||   ||||||  ||||    
T  18246656 atgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaa 18246557  T
Q  138 taggagatgaaagtggctttctttttggatctgc 171  Q
     || ||||||| | |||| |||||||| ||||||    
T  18246556 cagaagatgaacgcggctgtctttttgaatctgc 18246523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 32548918 - 32548995
Alignment:
Q  70 ttgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatcctaaagaatggttaaataggagatgaa 148  Q
    ||||||||| |||||||||||| ||| ||||||||| |||||||||  ||||||| | ||||  ||||||| |||||||    
T  32548918 ttgagtagacttaagatagctt-ctttctcttttataagtggacttagaatcctagataatgtctaaatagaagatgaa 32548995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 9448 - 9550
Alignment:
Q  26 atgagattgtggatgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatcctaa 125  Q
    |||| |||||||||||||||||||||||| ||| |||||| |  ||||||||| | ||||||||||| ||||||||||||||||||| ||| |||| |||    
T  9448 atgaaattgtggatgaaattaaagtggtgacttagttttgagctttgagtagactgaagatagcttctttcctcttttatgagtggatttggaatcttaa 9547  T
Q  126 aga 128  Q
    |||    
T  9548 aga 9550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 53553728 - 53553627
Alignment:
Q  70 ttgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatcctaaagaatggttaaataggagatgaaagtggctttctttttggatct 169  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||| ||  |||||||||||||||||  ||| | |||||||||||    
T  53553728 ttgagtagattaaagatagcttctttcctcttttatgagtggacttggaatcctagagagtgcctaaataggagatgaaaggcgctgt-tttttggatct 53553630  T
Q  170 gct 172  Q
    |||    
T  53553629 gct 53553627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 171
Target Start/End: Complemental strand, 1259403 - 1259270
Alignment:
Q  38 atgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatcctaaagaatggttaaa 137  Q
    |||||||||||| | | |||||| ||||| | |||||||| || ||||||||||| |||||||| ||||||||||| || |||||   ||||||  ||||    
T  1259403 atgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaa 1259304  T
Q  138 taggagatgaaagtggctttctttttggatctgc 171  Q
     || |||||||   |||| |||||||| ||||||    
T  1259303 cagaagatgaacacggctgtctttttgaatctgc 1259270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 171
Target Start/End: Complemental strand, 37242691 - 37242558
Alignment:
Q  38 atgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatcctaaagaatggttaaa 137  Q
    |||||||||||| | | |||||| ||||| | |||||||| || ||||||||||| |||||||| ||||||||||| || |||||   ||||||  ||||    
T  37242691 atgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaa 37242592  T
Q  138 taggagatgaaagtggctttctttttggatctgc 171  Q
     || |||||||   |||| |||||||| ||||||    
T  37242591 cagaagatgaacacggctgtctttttgaatctgc 37242558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 171
Target Start/End: Original strand, 16989581 - 16989714
Alignment:
Q  38 atgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatcctaaagaatggttaaa 137  Q
    |||||||||||| | | |||||| ||||| | |||||||| || ||||||||||| |||||||| ||||||||||| || |||||   ||||||  ||||    
T  16989581 atgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatccatgagaatgtctaaa 16989680  T
Q  138 taggagatgaaagtggctttctttttggatctgc 171  Q
     || ||||||| | |||| |||||||| ||||||    
T  16989681 cagaagatgaacgcggctgtctttttgaatctgc 16989714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 2282214 - 2282330
Alignment:
Q  34 gtggatgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatcctaaagaatggt 133  Q
    |||||||| ||||||| ||| |||||| | |||  |||||||||||| |||| ||| || |||||||| ||||| |||||||  || ||||  |||||      
T  2282214 gtggatgagattaaagcggtttcttgggtgtggtcattgagtagattaaagaaagcatcgttcctcttctatgaatggacttagaaccctagggaatgcc 2282313  T
Q  134 taaataggagatgaaag 150  Q
    ||||||| |||||||||    
T  2282314 taaatagaagatgaaag 2282330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 4913458 - 4913390
Alignment:
Q  43 attaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtgg 111  Q
    ||||||||||||||||||| ||||   ||||||||||| | ||||||||| |  |||||||| ||||||    
T  4913458 attaaagtggtgtcttggtgttggtctttgagtagattgaggatagcttcttgtctcttttacgagtgg 4913390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 33858724 - 33858647
Alignment:
Q  78 atttaagatagcttccttcctcttttatgagtggacttgaaatcctaaagaatggttaaataggagatgaaagtggct 155  Q
    |||||||| ||||||||||||||| |||||||||||||| ||||||  ||||||  ||||||| ||||||| ||||||    
T  33858724 atttaagaaagcttccttcctcttatatgagtggacttggaatcctcgagaatgtctaaatagaagatgaacgtggct 33858647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 1479522 - 1479469
Alignment:
Q  71 tgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatccta 124  Q
    |||||||||| |||||||| || ||||||||||||||||||||||| |||||||    
T  1479522 tgagtagattaaagatagcatcgttcctcttttatgagtggacttggaatccta 1479469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 11272498 - 11272583
Alignment:
Q  31 attgtggatgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtggacttg 116  Q
    |||||| ||||||| |||| ||| |||||| |||||   |||||||| || ||||||||||| |||||||| |||||||| |||||    
T  11272498 attgtgaatgaaatcaaagcggtttcttgggtttggacgttgagtaggttaaagatagcttctttcctcttctatgagtgaacttg 11272583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 31234855 - 31234771
Alignment:
Q  38 atgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatcc 122  Q
    |||||||||||| | | |||||| ||||| | |||||||| || ||||||||||| |||||||| |||||||||||||| |||||    
T  31234855 atgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacttggaatcc 31234771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 42460215 - 42460099
Alignment:
Q  34 gtggatgaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatcctaaagaatggt 133  Q
    |||||||| ||||||| |||||||||| | ||| || |||| ||  | |||||||| || |||||||||||||||| |||||| ||||||| ||| ||      
T  42460215 gtggatgagattaaagcggtgtcttgggtgtggatactgagcaggctaaagatagcatcgttcctcttttatgagtagacttggaatcctagagagtgcc 42460116  T
Q  134 taaataggagatgaaag 150  Q
    ||||||| |||||||||    
T  42460115 taaatagaagatgaaag 42460099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 21245325 - 21245264
Alignment:
Q  16 aaggatgtttatgagattgtggatgaaattaaagtggtgtcttggttttgggtattgagtag 77  Q
    ||||| ||| |||||||| | || ||||| |||||| |||||||||||||||| ||||||||    
T  21245325 aaggaggttgatgagattatcgacgaaataaaagtgttgtcttggttttgggttttgagtag 21245264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 36989006 - 36989090
Alignment:
Q  40 gaaattaaagtggtgtcttggttttgggtattgagtagatttaagatagcttccttcctcttttatgagtggacttgaaatccta 124  Q
    ||||| |||| ||| |||||| ||||| | |||||||| || ||||||||||| |||||||| ||| ||||||| || |||||||    
T  36989006 gaaatcaaagcggtttcttgggtttggttgttgagtaggttgaagatagcttctttcctcttctataagtggacgtggaatccta 36989090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University