View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10030_low_6 (Length: 470)
Name: NF10030_low_6
Description: NF10030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10030_low_6 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 451
Target Start/End: Original strand, 7008368 - 7008807
Alignment:
| Q |
11 |
gaagcagagacacagacacaaccctgacacatacacgtcaacaccaataaaatgacataattcaatgtaatcaagtgttggtgttgtgtcagtgtcaaac |
110 |
Q |
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| T |
7008368 |
gaagcacagacacagacacgaccctgacacatacatgtcaacaccaataaaatgacataattcaatgtaatcaagtgttggtgttctgtcagtgtcaaac |
7008467 |
T |
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| Q |
111 |
aacgggacacaccttctatcaaaagtgttgatgcaactcatcatgcccgtgcatacaatgctttcctgctcgagtgtttttctcgcttatgagtaaatta |
210 |
Q |
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| T |
7008468 |
aatgggacacaccttcaatcaaaagtgttga-gcaactcatcatgcacgtgcgtacaatgcttgcctgctcgagcacttttctcgcttatgagtaaacta |
7008566 |
T |
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| Q |
211 |
tgagtcaaactcaacaacaattcacgtgtatatttatatgtaaagagttcaaccacataattttaaagcataaagtttaaatcttctcgaatatggtttt |
310 |
Q |
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| T |
7008567 |
tgagtcatactcaacaacaattcacgtgtatatttatatgcaaagagttcgaccacataattttaaagcataaagtttaaatcttctcgaatatggtttt |
7008666 |
T |
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| Q |
311 |
aaaatgactaccacttttgattgataataatttctctttccccaatttatgaaaaacaaaagtttatatatgttggtttcttaaacattcctcttaaagc |
410 |
Q |
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| T |
7008667 |
aaaacgactaccacttttaattgataataatttctctttccccaatttatgaaaaacaaaagtttatatatgttggttttttaaacattcctcttaaagc |
7008766 |
T |
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| Q |
411 |
aacaaaactaattggaatcataatatttttcttctgccatt |
451 |
Q |
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| T |
7008767 |
aacaaaactaattggaatcataatatttttcttctgccatt |
7008807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 29049905 - 29049947
Alignment:
| Q |
59 |
aaaatgacataattcaatgtaatcaagtgttggtgttgtgtca |
101 |
Q |
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| T |
29049905 |
aaaattacataattcaatgtaatcatgtgttggtgttgtgtca |
29049947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 7442863 - 7442928
Alignment:
| Q |
57 |
ataaaatgacataattcaatgtaat--caagtgttggtgttgtgtcagtgtcaaacaacgggacac |
120 |
Q |
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| T |
7442863 |
ataaaattacataattcagtgtaattacaagtgttggtgttgtatcagtgtcggacaccgggacac |
7442928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 18147 - 18104
Alignment:
| Q |
59 |
aaaatgacataattcaatgtaat--caagtgttggtgttgtgtc |
100 |
Q |
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| T |
18147 |
aaaataacataattcaatgtaatcgcaagtgttggtgttgtgtc |
18104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 2039888 - 2039848
Alignment:
| Q |
59 |
aaaatgacataattcaatgtaatcaagtgttggtgttgtgt |
99 |
Q |
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| T |
2039888 |
aaaatgacatgattcaatgtaatcatgtattggtgttgtgt |
2039848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 37496724 - 37496767
Alignment:
| Q |
59 |
aaaatgacataattcaatgtaat--caagtgttggtgttgtgtc |
100 |
Q |
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| T |
37496724 |
aaaatgacataattcaatgtaatcacaagtgtcggtgttgtgtc |
37496767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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