View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10031_high_4 (Length: 382)
Name: NF10031_high_4
Description: NF10031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10031_high_4 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 43519806 - 43519446
Alignment:
| Q |
1 |
aaagttcctgttaatagtgaaaaagaactcatcaaagttgttgcaaataaatatgcgtcagtttatgtcccatttcacctataaaatacctagtgttggg |
100 |
Q |
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| T |
43519806 |
aaagttcctgttaatagtgaaaaagaactcatcaaagttgttgcaaataaatatgcgtcagtttatgtcccatttcacctataaaatacctagtgttggg |
43519707 |
T |
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| Q |
101 |
gaagacaaactcaaagaatgttccccatttccagcacaagctcacataaacccaatgctgaaactagcaaagcttcttcatttcaaaggtggttttcatg |
200 |
Q |
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| T |
43519706 |
gaagacaaactcaaagaatgttccccatttccagcacaagctcacataaacccaatgctgaaactagcaaagcttcttcatttcaaaggtggttttcatg |
43519607 |
T |
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| Q |
201 |
tcacctttgttcacacggaatacaatcacaaacgtgaaacataaccaacatgctattattgtggttggttatggtgttgcacatgatagtatcaagtatt |
300 |
Q |
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| T |
43519606 |
tcacctttgttcacacggaatacaatcacaaacgtgaaacataaccaacatgctattattgtggttggttatggtgttgcacatgatagtatcaagtatt |
43519507 |
T |
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| Q |
301 |
ggtgagtaaagaagtcac-gggtagtgaatggggtgagacccttagagaagcacaagtgtc |
360 |
Q |
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| T |
43519506 |
ggtgagtaaagaaatcacggggtagtgaatggggtgagacccttagagaagcacaagtgtc |
43519446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 124 - 235
Target Start/End: Original strand, 88918 - 89029
Alignment:
| Q |
124 |
cccatttccagcacaagctcacataaacccaatgctgaaactagcaaagcttcttcatttcaaaggtggttttcatgtcacctttgttcacacggaatac |
223 |
Q |
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| T |
88918 |
cccatatccagcacaaggtcacataaacccaatgctgaacatagcaaaacttcttcatttcaaaggtggttttcatgtcacctttgttaacacagaatac |
89017 |
T |
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| Q |
224 |
aatcacaaacgt |
235 |
Q |
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| T |
89018 |
aatcacaaacgt |
89029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 88756 - 88804
Alignment:
| Q |
65 |
atgtcccatttcacctataaaatacctagtgttggggaagacaaactca |
113 |
Q |
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| T |
88756 |
atgtccaatttcacctataaaatacctagtgttgtggaaaacaaactca |
88804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 124 - 235
Target Start/End: Complemental strand, 26676561 - 26676450
Alignment:
| Q |
124 |
cccatttccagcacaagctcacataaacccaatgctgaaactagcaaagcttcttcatttcaaaggtggttttcatgtcacctttgttcacacggaatac |
223 |
Q |
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||||||||||||||||| ||||||||| |||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||| |
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| T |
26676561 |
cccatttccagcacaaggtcacataaatccaatgctcaaacttgcaaaacttcttcattttaaaggtggttttcatgtcacctttgttaacactgaatat |
26676462 |
T |
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| Q |
224 |
aatcacaaacgt |
235 |
Q |
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|||||||||||| |
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| T |
26676461 |
aatcacaaacgt |
26676450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 124 - 235
Target Start/End: Complemental strand, 26948169 - 26948058
Alignment:
| Q |
124 |
cccatttccagcacaagctcacataaacccaatgctgaaactagcaaagcttcttcatttcaaaggtggttttcatgtcacctttgttcacacggaatac |
223 |
Q |
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| T |
26948169 |
cccatttccagcacaaggtcacataaatccaatgctcaaacttgcaaaacttcttcattttaaaggtggttttcatgtcacctttgttaacactgaatat |
26948070 |
T |
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| Q |
224 |
aatcacaaacgt |
235 |
Q |
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| T |
26948069 |
aatcacaaacgt |
26948058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 26903748 - 26903638
Alignment:
| Q |
125 |
ccatttccagcacaagctcacataaacccaatgctgaaactagcaaagcttcttcatttcaaaggtggttttcatgtcacctttgttcacacggaataca |
224 |
Q |
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|||||||||||||||| ||||||||| |||||||| ||||| ||||| ||||||||||||||| ||| ||||||||||||||||||| |||| ||||||| |
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| T |
26903748 |
ccatttccagcacaaggtcacataaatccaatgctcaaacttgcaaaacttcttcatttcaaaagtgattttcatgtcacctttgttaacactgaataca |
26903649 |
T |
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| Q |
225 |
atcacaaacgt |
235 |
Q |
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| T |
26903648 |
atcacaaacgt |
26903638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 37403641 - 37403591
Alignment:
| Q |
131 |
ccagcacaagctcacataaacccaatgctgaaactagcaaagcttcttcat |
181 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||| || |||||| |
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| T |
37403641 |
ccagcacaaggtcacataaacccaatgctaaaactagcaaaactccttcat |
37403591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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