View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10031_low_1 (Length: 675)
Name: NF10031_low_1
Description: NF10031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10031_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 14 - 654
Target Start/End: Original strand, 26045922 - 26046562
Alignment:
| Q |
14 |
ggacatcatctctgccacctattgtaatgacattcaagaaaaatctcatctatcaaacaaatcgccccggttttaaacaacctcggaataagatcaaact |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26045922 |
ggacaacatctctgccacctattgtaatgacattcaagaaaaatctcatctatcaaacaaatcgccccggttttaaacaacctcggaataagatcaaact |
26046021 |
T |
|
| Q |
114 |
cagtaccctccacatccattttcatcacaacaaaatcattcttcgaaaccgtcttcttcaaccaattcgcaaaatcaaatccctttatcttctccacctc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26046022 |
cagtaccctccacatccattttcatcacaacaaaatcattcttcgaaaccgtcttcttcaaccaattcgcaaaatcaaatccctttatcttctccacctc |
26046121 |
T |
|
| Q |
214 |
cccatcaaaccccttccctatcgaccgcaaaggttgaatcctacccatcccccttcctttaacctcaacatgctcccccggatcacgatgaatctcaaac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
26046122 |
cccatcaaaccccttccctatcgaccgcaaaggttgaatcctacccatcccccttcctttaacctcaacatgctcccccggatcacgatgaatctcgaaa |
26046221 |
T |
|
| Q |
314 |
gctaaagtctcattcttcacccaagcagcataaggaaccaaagtaagccctttcttcaacccatactccttatgaaaatgcttatcggcttcaatcgcat |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26046222 |
gctaaagtctcattcttcacccaagcagcataaggaaccaaagtaagcccttttttcaacccatactccttatgaaaatgcttatcggcttcaatcgcat |
26046321 |
T |
|
| Q |
414 |
acacatgaaatgtcttattctgtttaggatattgtttcctaaaccaagatcctatactagaaccatagcttctagctccaacatcaacatatatatacct |
513 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
26046322 |
acacatgaaatgtcttattttgcttaggatattgtttcctaaaccaagatcctatactagaaccatagcttctagctccaacatcaacatataaatacct |
26046421 |
T |
|
| Q |
514 |
atttttgaaacttatatcaaccattgaagaaagatactttatattcatcaaattccttttcaatgtaatccaaggcttcaatggttccttttcaatcaat |
613 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26046422 |
attcttgaaacttatatcaaccattgaagaaagatactttatattcatcaaatttcttttcaatgtaatccaaggcttcaatggttccttttcaatcaat |
26046521 |
T |
|
| Q |
614 |
ggctcagcaattctaaccaaatctttcttataccccggaac |
654 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26046522 |
ggctcagcaattctaaccaaatctttcttataccccggaac |
26046562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 7e-60; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 321 - 622
Target Start/End: Complemental strand, 3697226 - 3696925
Alignment:
| Q |
321 |
tctcattcttcacccaagcagcataaggaaccaaagtaagccctttcttcaacccatactccttatgaaaatgcttatcggcttcaatcgcatacacatg |
420 |
Q |
| |
|
|||||||| | ||||| |||||||| || | |||||| | |||||| |||| | ||||||| | ||||||||| ||||| |||||||| ||||| |||| |
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|
| T |
3697226 |
tctcattcctaacccatgcagcatatggtaacaaagttaccccttttttcatcacatactcttgatgaaaatgtttatcagcttcaattgcataaacatc |
3697127 |
T |
|
| Q |
421 |
aaatgtcttattctgtttaggatattgtttcctaaaccaagatcctatactagaaccatagcttctagctccaacatcaacatatatatacctatttttg |
520 |
Q |
| |
|
||| |||||||||||||| |||||||||||| ||||||| ||| || || |||||||||||||||||||||||||||||||| | ||||||| | || |
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|
| T |
3697126 |
aaaagtcttattctgttttggatattgtttcttaaaccagcttccaatgcttgaaccatagcttctagctccaacatcaacatacacatacctactctta |
3697027 |
T |
|
| Q |
521 |
aaacttatatcaaccattgaagaaagatactttatattcatcaaattccttttcaatgtaatccaaggcttcaatggttccttttcaatcaatggctcag |
620 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||| ||| |||| | ||||| || ||||| |||||||||||||||| |||||||||| ||||| |
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|
| T |
3697026 |
aagcttatatcaaccattgaagatgcatactttatattcttcacattcttcttcaaagttatccatggcttcaatggttcctcttcaatcaattcctcag |
3696927 |
T |
|
| Q |
621 |
ca |
622 |
Q |
| |
|
|| |
|
|
| T |
3696926 |
ca |
3696925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 3697533 - 3697355
Alignment:
| Q |
14 |
ggacatcatctctgccacctattgtaatgacattcaagaaaaatctcatctatcaaacaaatcgccccggttttaaacaacctcggaataagatcaaact |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||| ||||| | |||||| || || || |||| ||||||||| ||||| | |||||| | |
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|
| T |
3697533 |
ggacaacatctctgccacctattgtaatgacactcaagaaaaatttcatcgaccaaacatatagctccagtttcaaacaaccttggaatcaaatcaaatt |
3697434 |
T |
|
| Q |
114 |
cagtaccctccacatccattttcatcacaacaaaatcattcttcgaaaccgtcttcttcaaccaattcgcaaaatcaaa |
192 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||| ||| | | |||||| | ||||||||| | ||||||||||| |
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|
| T |
3697433 |
cagtaccttccacatccattttcatcacaacgaaatcgttcattgtaaccgtatgcttcaaccattcagcaaaatcaaa |
3697355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 585 - 648
Target Start/End: Complemental strand, 21220085 - 21220022
Alignment:
| Q |
585 |
aaggcttcaatggttccttttcaatcaatggctcagcaattctaaccaaatctttcttataccc |
648 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
21220085 |
aaggtttcaatggttccttttcaatcaatggctcaacaattctaatcaaatctttcttataccc |
21220022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 395 - 597
Target Start/End: Original strand, 26957389 - 26957591
Alignment:
| Q |
395 |
ttatcggcttcaatcgcatacacatgaaatgtcttattctgtttaggatattgtttcctaaaccaagatcctatactagaaccatagcttctagctccaa |
494 |
Q |
| |
|
||||| |||||||| ||||| || | |||||| |||||||| || || ||||||||| | ||||| ||| || || |||||||||||||| ||||||| |
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|
| T |
26957389 |
ttatctgcttcaattgcataaacttcaaatgttttattctgctttgggtattgtttcttgaaccagcttccaatgcttgaaccatagcttcttgctccaa |
26957488 |
T |
|
| Q |
495 |
catcaacatatatatacctatttttgaaacttatatcaaccattgaagaaagatactttatattcatcaaattccttttcaatgtaatccaaggcttcaa |
594 |
Q |
| |
|
||||||||| | ||| | ||||||||||||||||||||||||||| | |||||||| ||| |||| || || ||||||| |||||| || ||||| |
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|
| T |
26957489 |
tatcaacataaacataattgcttttgaaacttatatcaaccattgaagttaagtactttatgttcttcaagtttctcttcaatgcaatccatggtttcaa |
26957588 |
T |
|
| Q |
595 |
tgg |
597 |
Q |
| |
|
||| |
|
|
| T |
26957589 |
tgg |
26957591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 26957011 - 26957147
Alignment:
| Q |
14 |
ggacatcatctctgccacctattgtaatgacattcaagaaaaatctcatctatcaaacaaatcgccccggttttaaacaacctcggaataagatcaaact |
113 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| |||||||||| |||||| |||||||||||||| || |||| || |||||| || || | || ||| | |
|
|
| T |
26957011 |
ggacaacatctttgccacctattataatgacactcaagaaaaagctcatcaatcaaacaaatcgcaccagtttgaatcaacctaggtatcaaatgaaatt |
26957110 |
T |
|
| Q |
114 |
cagtaccctccacatccattttcatcacaacaaaatc |
150 |
Q |
| |
|
||||||| || ||||||||||||| || |||||||| |
|
|
| T |
26957111 |
cagtaccttcaacatccattttcaaaaccacaaaatc |
26957147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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