View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10031_low_2 (Length: 547)
Name: NF10031_low_2
Description: NF10031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10031_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 52 - 531
Target Start/End: Original strand, 39468146 - 39468626
Alignment:
| Q |
52 |
tacttctgttgaatctgatgattggaaaaatttgaattccaatactgattttgaattattgcgtgatttttctgtggataatgatgctcaaaatgttgtt |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39468146 |
tacttctgttgaatctgatgattggaaaaatttgaattccaatactgattttgaattattgcgtgatttttctgtggataatgatgttcaaaatgttgtt |
39468245 |
T |
|
| Q |
152 |
cctggtgtttcttctggttcctctttattttatcctgctgatatgcggttgccggaacctcccaccgggtttgccattgacgaaaacggtgaacttctgc |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39468246 |
cctggtgtttcttctggttcctctttattttatcctgctgatatgccgttgccggaacctcccaccgggtttgccattgacgaaaacggtgaacttctgc |
39468345 |
T |
|
| Q |
252 |
ttacttcggcaaatcggcttatcaccatagtgagtattgctttgttctgnnnnnnngtgttgattat--cattcgtttgagtaattatcgaaatcttaaa |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
39468346 |
ttacttcggcaaatcggcttatcaccatagtgagtattgctttgttctg-ttttttgtgttgattattgcattcgtttgagtaattatctaaatcttaaa |
39468444 |
T |
|
| Q |
350 |
taagttattaacaggttgatcctatgaataaccttcctttggattgtgttgttcggagaatgttcaaaagttctgatagagatgaatgtatgttgctttg |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39468445 |
taagttattaacaggttgatcctatgaataaccttcctttggattgtgttgttcgaagaacgttcaaaagttctgatagagatgaatgtatgttgctttg |
39468544 |
T |
|
| Q |
450 |
cccggttgacacgtaagtaattataaagttttacaacgtctgtgtatatgaattaatctctttgtttttattattattgatg |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39468545 |
cccggttgacacgtaagtaattataaagttttacaacgtctgtgtatatgaattaatctctttgtttttattattattgatg |
39468626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University