View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10031_low_3 (Length: 444)
Name: NF10031_low_3
Description: NF10031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10031_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 3 - 286
Target Start/End: Original strand, 54791641 - 54791924
Alignment:
| Q |
3 |
ccaatgagatggacatcacaaatgaaaacctcaacaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacag |
102 |
Q |
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| T |
54791641 |
ccaatgaaattgacattacaaatgaaaacctcaacaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacag |
54791740 |
T |
|
| Q |
103 |
gcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgcttcatgtttggccatgtan |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791741 |
gcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgcttcatgtttggccatgtat |
54791840 |
T |
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| Q |
203 |
nnnnnnctattcttgtacgatcattgaagcagaagagtagnnnnnnncttataggttttaatgctacaaaaatgtctgtctcac |
286 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
54791841 |
ttttttctattcttgtatgatcattgaagcagaagagtagaaaaaaacttataggttttaatgctacaaaaatgtctgtctcac |
54791924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 54777505 - 54777220
Alignment:
| Q |
3 |
ccaatgagatggacatcacaaatgaaaacctcaacaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacag |
102 |
Q |
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||||||| || ||||| |||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54777505 |
ccaatgaaattgacattccaaatgaaaacctcaacataattcggtataagtataatgagaagaccatgtccttaagtaggatgctggaggagaatgacag |
54777406 |
T |
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| Q |
103 |
gcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgcttcatgtttggccatgtan |
202 |
Q |
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| T |
54777405 |
gcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgcttcatgtttggccatgtat |
54777306 |
T |
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| Q |
203 |
nnnnnnctattcttgtacgatcattgaagcagaagagtagnnnnnnnctt--ataggttttaatgctacaaaaatgtctgtctcac |
286 |
Q |
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||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
54777305 |
gtttttctattcttgtacgatcattgaggcagaagagtagaaaaaaacttgcataggttttaatgctacaaaaatgtctgtctcac |
54777220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 52284316 - 52284538
Alignment:
| Q |
20 |
acaaatgaaaacctcaacaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttg |
119 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52284316 |
acaaatgaaaacctcaacaaaatgcaatataagtataacgagaagaccatgtctttaagtaggatgctggaggagaaagacaggcttcacaatgcttttg |
52284415 |
T |
|
| Q |
120 |
ttgaaggtttgtataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgcttcatgtttggccatgtannnnnnnctattcttgta |
219 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |
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| T |
52284416 |
ttgaaggtttgtataatttctgttagaatctgattttgtcttattgtatgtaaaggccgtgtgcttcaagtttggccatgtatgtttttatattcttgta |
52284515 |
T |
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| Q |
220 |
cgatcattgaagcagaagagtag |
242 |
Q |
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|| |||||||||||| ||||||| |
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| T |
52284516 |
cgttcattgaagcagtagagtag |
52284538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 799571 - 799734
Alignment:
| Q |
5 |
aatgagatggacatcacaaatgaaaacctcaacaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacaggc |
104 |
Q |
| |
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|||||||| || || || |||||||| |||||||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||| | |
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| T |
799571 |
aatgagattgatattactaatgaaaatctcaacaagatgcagtataggtataatgagaagactatgtccttgagtaggatgctggaggagaaagacaaac |
799670 |
T |
|
| Q |
105 |
ttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctgattttgccttattgtat |
168 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
799671 |
ttcacagtgcttttgttgaaggtttgtataatttctgttataatctgattttgccttattgtat |
799734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 377 - 424
Target Start/End: Original strand, 54793463 - 54793510
Alignment:
| Q |
377 |
gttgttctgctgtgaatatattgtggagactaaagttgttccccctca |
424 |
Q |
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| T |
54793463 |
gttgttctgctgtgaatatattgtggagactaaagttgttccccctca |
54793510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 350
Target Start/End: Original strand, 54791949 - 54791988
Alignment:
| Q |
311 |
gagtcaaggagtatgcagcgtaaagcccgtgaggaggtac |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
54791949 |
gagtcaaggagtatgcagcgtaaagcccgtgaggaggtac |
54791988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 421
Target Start/End: Original strand, 52286135 - 52286179
Alignment:
| Q |
377 |
gttgttctgctgtgaatatattgtggagactaaagttgttccccc |
421 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
52286135 |
gttgttctgctgtgagtatattgtggagactaatgttgttccccc |
52286179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 346
Target Start/End: Complemental strand, 54777195 - 54777160
Alignment:
| Q |
311 |
gagtcaaggagtatgcagcgtaaagcccgtgaggag |
346 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
54777195 |
gagtcaaggagtatgcagcgtaaagcccgtgaggag |
54777160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 801324 - 801369
Alignment:
| Q |
378 |
ttgttctgctgtgaatatattgtggagactaaagttgttccccctc |
423 |
Q |
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|||||||||||| |||||||||||||||||||||||| | |||||| |
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| T |
801324 |
ttgttctgctgtaaatatattgtggagactaaagttgatacccctc |
801369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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