View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10031_low_5 (Length: 409)
Name: NF10031_low_5
Description: NF10031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10031_low_5 |
 | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0897 (1 HSPs) |
| | |
|
| [»] scaffold0304 (2 HSPs) |
| | |
|
| [»] scaffold0319 (2 HSPs) |
| | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
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| [»] scaffold0282 (1 HSPs) |
| | |
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| [»] scaffold0107 (1 HSPs) |
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| [»] scaffold0001 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 2 - 402
Target Start/End: Complemental strand, 10787408 - 10787008
Alignment:
| Q |
2 |
tgcattatgaggtgtacccaattcatgctagaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctctgtgaccg |
101 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
10787408 |
tgcattctgaggtgtacccagttcatgctagaccctgagccctgcattcctaccgtccaaggcttgttgcagaatgctatggacgctggctctgtgaccg |
10787309 |
T |
|
| Q |
102 |
ccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaaaaaacgt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10787308 |
ccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaaaaaacgt |
10787209 |
T |
|
| Q |
202 |
tgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcga |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||| |
|
|
| T |
10787208 |
tgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattactgcctcctcagttggttcgccgtcga |
10787109 |
T |
|
| Q |
302 |
ttctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatctccagcgcttct |
401 |
Q |
| |
|
|| || || |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10787108 |
ttttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatctccagcgcttct |
10787009 |
T |
|
| Q |
402 |
g |
402 |
Q |
| |
|
| |
|
|
| T |
10787008 |
g |
10787008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 2 - 402
Target Start/End: Original strand, 14688385 - 14688785
Alignment:
| Q |
2 |
tgcattatgaggtgtacccaattcatgctagaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctctgtgaccg |
101 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
14688385 |
tgcattttgaggtgcacccagttcatgctggaccctgagccctgcatccctaccatccaaggtttgttgaagaatgccatggatgctggctctgtgaccg |
14688484 |
T |
|
| Q |
102 |
ccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaaaaaacgt |
201 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
14688485 |
ccctgtatttcgacgtgctgctgagggcgcttgacggtatcacacctgataccgctacactttttcatgatttttggtctcttttggagacaagaaacgt |
14688584 |
T |
|
| Q |
202 |
tgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcga |
301 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||| || |||||| |
|
|
| T |
14688585 |
cgcgcgctatcgcagagatataacgggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattactgcctcctcggttggtccgtcgtcga |
14688684 |
T |
|
| Q |
302 |
ttctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatctccagcgcttct |
401 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14688685 |
ttctgcaacaactggcacaactggcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggatgagcaatatgatctccagcgcttct |
14688784 |
T |
|
| Q |
402 |
g |
402 |
Q |
| |
|
| |
|
|
| T |
14688785 |
g |
14688785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 2 - 401
Target Start/End: Original strand, 7360387 - 7360786
Alignment:
| Q |
2 |
tgcattatgaggtgtacccaattcatgctagaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctctgtgaccg |
101 |
Q |
| |
|
|||||| ||||||||||||| |||||||| || |||||||||||| | |||||||||||||| || ||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
7360387 |
tgcattttgaggtgtacccagttcatgctggatcctgagccctgcgtccctaccatccaaggtttcttgaagaatgccatggatgctggctctgtgaccg |
7360486 |
T |
|
| Q |
102 |
ccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaaaaaacgt |
201 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
7360487 |
ctctgtacttcgacgtactgctgagggcgcttgacggtgtcacacctgatgccgctgcactttttcatgatttcttgtctcttttggagacacgaaacgt |
7360586 |
T |
|
| Q |
202 |
tgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcga |
301 |
Q |
| |
|
||||||||||| ||||| |||||||||| ||||||| |||||| || |||||||||||||| || ||||||||||| ||||| || | || |||||| |
|
|
| T |
7360587 |
cgcgcgctatcgtagagacataacaggcgtggacacctctttccgtttcgtttcaggctggtataaaagattactgcctcctcggttgatccgtcgtcga |
7360686 |
T |
|
| Q |
302 |
ttctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatctccagcgcttct |
401 |
Q |
| |
|
||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7360687 |
ttctgcaacaactggcacaactgtcgcggggatgtattgagacgtaactatcgaggctatcaccctgctgaggatgagcaatatgatctccagcgcttct |
7360786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 72 - 402
Target Start/End: Complemental strand, 10158119 - 10157781
Alignment:
| Q |
72 |
agaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatga |
171 |
Q |
| |
|
||||||||||||||| ||||| |||| ||| || ||||| |||||| || ||||||||||||||||| || | ||||| || |||||| |||| |
|
|
| T |
10158119 |
agaatgctatggatgatggctccgtgagcgcgctttactttgatgtaatgttgagggcgcttgacggtatctctcctgatataactgaacttttcaatga |
10158020 |
T |
|
| Q |
172 |
tttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagaga |
271 |
Q |
| |
|
|| ||||||||||||||||| || || |||||||| |||||||| |||||||| || |||||| ||| || ||||| ||||||||||||||||| || |
|
|
| T |
10158019 |
cttttggtctcttttggagacgaagaatgttgcgcgttatcgcagggagataacgggaggggactcccactttcgcttcgtttcaggctggtacaaaagg |
10157920 |
T |
|
| Q |
272 |
ttactgccccctcgac--------tggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatca |
363 |
Q |
| |
|
|| |||||||| | | || |||| ||||||||||||||||||||||| ||||| || |||| || || || ||||||||||| | ||| |
|
|
| T |
10157919 |
ttgctgcccccccccccccccagttgattcgtcgtcgattctgcaacaactggcacaactgccctggatatgggttaaggcgcaactatcgaggatttca |
10157820 |
T |
|
| Q |
364 |
ccctgctgaggacgagcaatatgatctccagcgcttctg |
402 |
Q |
| |
|
|||||||||||||| | |||| |||| ||||| ||||| |
|
|
| T |
10157819 |
tcctgctgaggacgaactatataatcttcagcgtttctg |
10157781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 2 - 402
Target Start/End: Complemental strand, 1730226 - 1729826
Alignment:
| Q |
2 |
tgcattatgaggtgtacccaattcatgctagaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctctgtgaccg |
101 |
Q |
| |
|
|||||| |||||||||| || |||||||| ||||||||||||| ||||||||| ||||||| ||| || ||||||||||||| || ||||||||||||| |
|
|
| T |
1730226 |
tgcattttgaggtgtactcagttcatgctgtaccctgagccctgtattcctaccgtccaaggtttgctgaagaatgctatggacgctggctctgtgaccg |
1730127 |
T |
|
| Q |
102 |
ccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaaaaaacgt |
201 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1730126 |
ccctgtacttcgatgtactgctgagggtgcttaacgatgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaagaaacgt |
1730027 |
T |
|
| Q |
202 |
tgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcga |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| |||| ||||||||| |
|
|
| T |
1730026 |
cgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtataagagattactgcctcctcagttggtccgccgtcga |
1729927 |
T |
|
| Q |
302 |
ttctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatctccagcgcttct |
401 |
Q |
| |
|
|| ||||| |||||||| |||||| ||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1729926 |
ttttgcaataactggcacaactgtcacggggatggattgagacgcaactatcgaggttatcgccttgctgaggacgagcaatatgatctccagcgcttct |
1729827 |
T |
|
| Q |
402 |
g |
402 |
Q |
| |
|
| |
|
|
| T |
1729826 |
g |
1729826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 22338584 - 22338649
Alignment:
| Q |
73 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacgg |
138 |
Q |
| |
|
||||||||||||||| |||||||||| ||| || ||||| ||||| |||||||||| || ||||| |
|
|
| T |
22338584 |
gaatgctatggatgctggctctgtgagcgcgctctactttgatgtcatgctgagggcactcgacgg |
22338649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 2 - 402
Target Start/End: Original strand, 14328916 - 14329316
Alignment:
| Q |
2 |
tgcattatgaggtgtacccaattcatgctagaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctctgtgaccg |
101 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||| ||| || ||||||| |||||||| ||||||||||||| |
|
|
| T |
14328916 |
tgcattttgaggtgtacccagttcatgctggaccctgagccctgcatccctaccatctaaggtttgctgaagaatgccatggatgctggctctgtgaccg |
14329015 |
T |
|
| Q |
102 |
ccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaaaaaacgt |
201 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14329016 |
ctctgtacttcgacgtactgctgagggcgcttgacggtatcacacctgatgccgctacactttttcatgatttctggtctcttttggagacacgaaacgt |
14329115 |
T |
|
| Q |
202 |
tgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcga |
301 |
Q |
| |
|
||||||||||||||||| ||||| || | |||||||||||||||||| |||||||||||||| || ||||||||||| ||||| || || | |||||| |
|
|
| T |
14329116 |
cgcgcgctatcgcagagacataacgggtgtggacacccgtttccgcttcgtttcaggctggtataaaagattactgcctcctcggttgatttgtcgtcga |
14329215 |
T |
|
| Q |
302 |
ttctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatctccagcgcttct |
401 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
14329216 |
ttctgcaacaactggcacaactgtcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggatgagcaatatgatctccaacgcttct |
14329315 |
T |
|
| Q |
402 |
g |
402 |
Q |
| |
|
| |
|
|
| T |
14329316 |
g |
14329316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 77 - 372
Target Start/End: Original strand, 18166626 - 18166922
Alignment:
| Q |
77 |
gctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttct |
176 |
Q |
| |
|
||||||||||| || ||||||||||| || ||||| |||||| ||||||| |||||||||||| ||| | |||||||||| ||| || |||| || | |
|
|
| T |
18166626 |
gctatggatgctggttctgtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaactcttcaatgactttt |
18166725 |
T |
|
| Q |
177 |
ggtctcttttggagac-aaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattac |
275 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| |||||||| ||||||||||| |||||| ||| ||||||||| || ||||||||||||||| | || | |
|
|
| T |
18166726 |
ggtctcttttggagacaaaaaaatgttgcgcgttatcgcagggagataacaggaggggactcccatttccgcttcgtctcaggctggtacaagcggttgc |
18166825 |
T |
|
| Q |
276 |
tgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccctgctga |
372 |
Q |
| |
|
|||| || | | || | ||||||||||||||||||||||| || ||| || |||||| | || |||||||||||||| | ||| |||||||| |
|
|
| T |
18166826 |
tgcctccccagttaatttgtcgtcgattctgcaacaactggcacaattgtcgtggagatggactaaggcgtaactatcgagggtttcatcctgctga |
18166922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 402
Target Start/End: Complemental strand, 24954960 - 24954569
Alignment:
| Q |
2 |
tgcattatgaggtgtacccaattcatgctagaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctctgtgaccg |
101 |
Q |
| |
|
|||||| ||||||||||||| |||||| | ||||||||||| ||||| |||||||||||||||||| || ||||||| |||||||| ||||||||||||| |
|
|
| T |
24954960 |
tgcattttgaggtgtacccagttcatgttggaccctgagccttgcatccctaccatccaaggcttgctgaagaatgccatggatgctggctctgtgaccg |
24954861 |
T |
|
| Q |
102 |
ccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaaaaaacgt |
201 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||| ||| || |||| |||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
24954860 |
ctctgtacttcgacgtactgctgagggcgcttgacggtatcacacctgatgccgctacactttttcatgatttctggtctcttctggagacacgaaacgt |
24954761 |
T |
|
| Q |
202 |
tgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcga |
301 |
Q |
| |
|
||||| ||||| |||| |||||||||| ||||||| |||||||||| |||||||||||||| || ||||||||||| |||||| || | || |||||| |
|
|
| T |
24954760 |
cgcgcgatatcgtcgagacataacaggcgtggacacctgtttccgcttcgtttcaggctggtataaaagattactgcctcctcgattgatccgtcgtcga |
24954661 |
T |
|
| Q |
302 |
ttctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatctccagcgcttct |
401 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24954660 |
ttctgcaaca---------actgtcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggataagcaatatgatctccagcgcttct |
24954570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 23621396 - 23621749
Alignment:
| Q |
20 |
caattcatgctagaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctctgtgaccgccctgtacttcgatgtac |
119 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| | || | ||| | ||||||||||||||| || ||||||||||| || ||||| |||||| |
|
|
| T |
23621396 |
caattcatgctagatattgagccatgcattcctaccgttaaacgtttgcttaggaatgctatggatgctggttctgtgaccgctctttactttgatgtaa |
23621495 |
T |
|
| Q |
120 |
tgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagaga |
219 |
Q |
| |
|
||||||| |||||||||||| ||| | ||| |||||| ||| || ||| || ||||||||||||||||||||||| |||||||| |||||||| || |
|
|
| T |
23621496 |
tgctgagagcgcttgacggtatcactcctgacaccgctgaactcttcattgacttttggtctcttttggagacaaaaaatgttgcgcgttatcgcaggga |
23621595 |
T |
|
| Q |
220 |
gataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcga-ctggttcgccgtcgattctgcaacaactggca |
318 |
Q |
| |
|
||||||||| |||||| ||| ||||||||| |||||| ||||||||||||| || |||||||| | | | |||| ||||||||||||||||||||||| |
|
|
| T |
23621596 |
gataacaggaggggactcccatttccgcttcgtttcatgctggtacaagaggttgctgccccccccagttaattcgtcgtcgattctgcaacaactggca |
23621695 |
T |
|
| Q |
319 |
taactgttacggggatggattgagacgtaactatcgaggttatcaccctgctga |
372 |
Q |
| |
|
|||||| || |||||||| || || ||||||| ||| | ||| |||||||| |
|
|
| T |
23621696 |
caactgtcgtggagatggattaaggcgcaactatctagggtttcatcctgctga |
23621749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 23195773 - 23196144
Alignment:
| Q |
1 |
ttgcattatgaggtgtacccaattcatgctagaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctctgtgacc |
100 |
Q |
| |
|
||||||| |||| || || ||||||||||| ||| |||||| |||||||||||| || | | ||| | ||| |||||||||| || ||||||||| |
|
|
| T |
23195773 |
ttgcattttgagatgcactcaattcatgctggacgttgagccatgcattcctaccgtcaagtgtttgcttaggaacactatggatgctggttctgtgacc |
23195872 |
T |
|
| Q |
101 |
gccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaaaaaacg |
200 |
Q |
| |
|
|| || ||||| |||||| ||||||| |||||||||||| ||| | |||||||||| ||| || |||| || ||||||||||||||||||||||| | |
|
|
| T |
23195873 |
gctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaactcttcaatgacttttggtctcttttggagacaaaaaatg |
23195972 |
T |
|
| Q |
201 |
ttgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcg |
300 |
Q |
| |
|
||||||| |||||||| ||||||| ||| |||||| ||| |||||||||||| |||||||||| ||||| || |||| || | | | |||| ||||| |
|
|
| T |
23195973 |
ttgcgcgttatcgcagggagataataggaggggactcccatttccgctttgtctcaggctggtttaagaggttgttgcctccccaattaattcgtcgtcg |
23196072 |
T |
|
| Q |
301 |
attctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccctgctga |
372 |
Q |
| |
|
|||||||||||||||||| |||||| || |||||| | || || ||||||||||| | ||| |||||||| |
|
|
| T |
23196073 |
attctgcaacaactggcacaactgtcgtggagatggactaaggcgcaactatcgagggtttcatcctgctga |
23196144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 80 - 402
Target Start/End: Complemental strand, 22643499 - 22643178
Alignment:
| Q |
80 |
atggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggt |
179 |
Q |
| |
|
|||||||| || ||||||||||| || ||||| |||||| ||||||| |||||||||||| ||| ||||||||||| ||| || |||| || |||| |
|
|
| T |
22643499 |
atggatgctggttctgtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcatt-ttgataccgctgaactcttcaatgacttttggt |
22643401 |
T |
|
| Q |
180 |
ctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgcc |
279 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||| |||| |||||| ||||| ||| ||||| ||| || | ||||||||||||||| || || || |
|
|
| T |
22643400 |
ctcttttggagacaaaaaatgttgcgcattatcgcagggagacaacaggaggggagtcccatttccacttcgtcttaggctggtacaagaggttgcttcc |
22643301 |
T |
|
| Q |
280 |
ccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgag |
379 |
Q |
| |
|
|| | |||| ||||||||||||||||||| ||| |||||| || |||||| | || || ||||||||||| | ||| |||||||| || || |
|
|
| T |
22643300 |
tcccaagttaattcgtcgtcgattctgcaacaactagcacaactgtcttggagatggactaaggcgcaactatcgagggtttcatcctgctgaagatgaa |
22643201 |
T |
|
| Q |
380 |
caatatgatctccagcgcttctg |
402 |
Q |
| |
|
|| ||| |||| ||||| ||||| |
|
|
| T |
22643200 |
cagtataatcttcagcgtttctg |
22643178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 22081226 - 22080824
Alignment:
| Q |
1 |
ttgcattatgaggtgtacccaattcatgctagaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctctgtgacc |
100 |
Q |
| |
|
||||||| |||| ||||||||||| ||| | || |||||| |||||||||||| || |||| || | |||| || |||||||| || ||||||||| |
|
|
| T |
22081226 |
ttgcattttgagatgtacccaatttatgttggatattgagccatgcattcctaccgtcaaaggttttcttaagaacgccatggatgctggttctgtgacc |
22081127 |
T |
|
| Q |
101 |
gccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaaaaaacg |
200 |
Q |
| |
|
|| || |||||||| |||||||||||||||||||| ||| ||| || |||||| ||| ||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22081126 |
gctctctacttcgacgtactgctgagggcgcttgatggtatcacacctgatactgctgaactctttcatgatttctggtctcttttggagacaagaaacg |
22081027 |
T |
|
| Q |
201 |
ttgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttca-ggctggtacaagagattactgccccctcgactggttcgccgtc |
299 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||| |||||||||||||| || | | ||||||||||||||||||||||| || | | | || |||| |
|
|
| T |
22081026 |
tcgcgcgctatcgcagggagataacaggcggggatacccgtttccgcttcgtctaatggctggtacaagagattactgcctccccagttaatccgtcgtc |
22080927 |
T |
|
| Q |
300 |
gattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatctccagcgctt |
399 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||| || ||||||||||| ||||| |||||||| || || |||||||||||||||||||| |
|
|
| T |
22080926 |
gattctgcaacaactggcacaactgtcgcggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccagcgctt |
22080827 |
T |
|
| Q |
400 |
ctg |
402 |
Q |
| |
|
||| |
|
|
| T |
22080826 |
ctg |
22080824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 196 - 402
Target Start/End: Original strand, 41375532 - 41375738
Alignment:
| Q |
196 |
aaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgc |
295 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
41375532 |
aaacgtcgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaagagattactgcctccttagttggttcgc |
41375631 |
T |
|
| Q |
296 |
cgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatctccagc |
395 |
Q |
| |
|
|||||||| ||||| |||||| | |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41375632 |
cgtcgattttgcaataactggtacaactgtcacggggatggattgagacgcaactatcgaggttatcaccctgctgaggacgagcaatatgatctccagc |
41375731 |
T |
|
| Q |
396 |
gcttctg |
402 |
Q |
| |
|
|||||| |
|
|
| T |
41375732 |
acttctg |
41375738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 41375363 - 41375532
Alignment:
| Q |
2 |
tgcattatgaggtgtacccaattcatgctagaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctctgtgaccg |
101 |
Q |
| |
|
|||||| ||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| || ||||||||||||| || ||||||||||||| |
|
|
| T |
41375363 |
tgcattttgaggtgtacccagttcatgctggaccctgagccctgcattcctaccgtccaaggcttgctgaagaatgctatggacgctggctctgtgaccg |
41375462 |
T |
|
| Q |
102 |
ccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatga |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
41375463 |
ccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatga |
41375532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 22799785 - 22799852
Alignment:
| Q |
74 |
aatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgt |
141 |
Q |
| |
|
|||||||||||||| |||||||||| ||| || ||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
22799785 |
aatgctatggatgctggctctgtgagcgcgctctactttgatgtcatgctgagggcgcttgatggtgt |
22799852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 74689 - 74288
Alignment:
| Q |
1 |
ttgcattatgaggtgtacccaattcatgctagaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctctgtgacc |
100 |
Q |
| |
|
||||||| |||| || ||||||||||||||||| |||||| |||||||||||| || | ||| | |||| ||||||||||| || ||||||||| |
|
|
| T |
74689 |
ttgcattttgagatgcacccaattcatgctagatgttgagccatgcattcctaccgtcaagcatttgcttaagaacgctatggatgctggttctgtgacc |
74590 |
T |
|
| Q |
101 |
gccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaaaaaacg |
200 |
Q |
| |
|
|| || ||||| |||||| || |||| || ||||||||| ||| || |||||||||| ||| || |||| || ||||||||||||||||| ||||| | |
|
|
| T |
74589 |
gctctttactttgatgtaatggtgagagcacttgacggtatcacacctgataccgctgaactcttcaatgagttttggtctcttttggagacgaaaaatg |
74490 |
T |
|
| Q |
201 |
ttgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcg |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||| ||||| || ||||||||||||||||| |||||||| || | | || ||||| |
|
|
| T |
74489 |
ttgcgcgctatcgcagggagataacaggaggggacacccgttttcgcttcgtctcaggctggtacaagaggttactgcctcccaagttaatccgtcgtcg |
74390 |
T |
|
| Q |
301 |
attctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatctccagcgcttc |
400 |
Q |
| |
|
|||||||||||||||||| |||||| || |||||| | || |||||||| ||||| ||||| |||||||| || || || |||||||| ||||| ||| |
|
|
| T |
74389 |
attctgcaacaactggcacaactgtcgtggagatggactaaggcgtaactaccgagggtatcatcctgctgaagatgaacagtatgatcttcagcgtttc |
74290 |
T |
|
| Q |
401 |
tg |
402 |
Q |
| |
|
|| |
|
|
| T |
74289 |
tg |
74288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 77 - 375
Target Start/End: Complemental strand, 39089 - 38791
Alignment:
| Q |
77 |
gctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttct |
176 |
Q |
| |
|
||||||||||| || ||||||||||| || ||||| |||||| ||||||| |||||||||||| ||| | |||||||||| |||||| |||| || | |
|
|
| T |
39089 |
gctatggatgctggttctgtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaacttttcaatgactttt |
38990 |
T |
|
| Q |
177 |
ggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattact |
276 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||||||| ||||||| ||| | ||| ||| ||||||||| |||||||||||||||| || || || |
|
|
| T |
38989 |
ggtctcttttggagacgaaaaatgttgcgcgttatcgcagggagataataggagaggattcccatttccgcttcatttcaggctggtacaaaaggttgct |
38890 |
T |
|
| Q |
277 |
gccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccctgctgagga |
375 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||| ||||| || |||||| | || || ||||||||||| | ||| ||||||||||| |
|
|
| T |
38889 |
gccccctcagttaattcgccgtcgattctgcaacaactggcaaaactgccctggagatggactaaggcgcaactatcgaggatttcatcctgctgagga |
38791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 77 - 375
Target Start/End: Original strand, 32649 - 32947
Alignment:
| Q |
77 |
gctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttct |
176 |
Q |
| |
|
||||||||||| || ||||||||||| || ||||| |||||| ||||||| |||||||||||| ||| | |||||||||| |||||| |||| || | |
|
|
| T |
32649 |
gctatggatgctggttctgtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaacttttcaatgactttt |
32748 |
T |
|
| Q |
177 |
ggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattact |
276 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||||||| ||||||| ||| | ||| ||| ||||||||| |||||||||||||||| || || || |
|
|
| T |
32749 |
ggtctcttttggagacgaaaaatgttgcgcgttatcgcagggagataataggagaggattcccatttccgcttcatttcaggctggtacaaaaggttgct |
32848 |
T |
|
| Q |
277 |
gccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccctgctgagga |
375 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||| ||||| || |||||| | || || ||||||||||| | ||| ||||||||||| |
|
|
| T |
32849 |
gccccctcagttaattcgccgtcgattctgcaacaactggcaaaactgccctggagatggactaaggcgcaactatcgaggatttcatcctgctgagga |
32947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 80 - 372
Target Start/End: Original strand, 3846 - 4138
Alignment:
| Q |
80 |
atggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggt |
179 |
Q |
| |
|
|||||||| || ||||||||||| || ||||| |||||| ||||||| ||||| ||||| ||| | |||||||||| ||| || |||| || |||| |
|
|
| T |
3846 |
atggatgctggttctgtgaccgctctttactttgatgtaatgctgagagcgctcgacggcatcactcctgataccgctgaactcttcaatgacttttggt |
3945 |
T |
|
| Q |
180 |
ctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgcc |
279 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| ||| |||| ||||||| ||| |||||||||| || || ||||| |
|
|
| T |
3946 |
ctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggggattcccatttctgctttgtctcatgctggtacaataggttgctgcc |
4045 |
T |
|
| Q |
280 |
ccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccctgctga |
372 |
Q |
| |
|
|| || | ||||| ||| ||||||||||||||||||| |||||| || |||||| | ||||| ||||||||||| | ||| |||||||| |
|
|
| T |
4046 |
tccccggttagttcgtcgttgattctgcaacaactggcacaactgtcgtggagatggactaagacgcaactatcgagggtttcatcctgctga |
4138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 73 - 324
Target Start/End: Original strand, 12276 - 12526
Alignment:
| Q |
73 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgat |
172 |
Q |
| |
|
|||||||||||| || |||||||||| ||| || ||||| ||||| |||||||||||||||||| | ||| | ||||||| || |||||| |||| |
|
|
| T |
12276 |
gaatgctatggacgctggctctgtgagcgctctttactttcatgtaatgctgagggcgcttgacgatatcactcctgataccactgaacttttcaatgac |
12375 |
T |
|
| Q |
173 |
ttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagat |
272 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || ||| |||| ||||||||| ||||||||||||||| | |
|
|
| T |
12376 |
ttttggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggcgattcccatttctgctttgttttaggctggtacaagaggt |
12475 |
T |
|
| Q |
273 |
tactgccccctcgactggttcgccgtcgattctgcaacaactggcataactg |
324 |
Q |
| |
|
| ||||||||| | | |||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
12476 |
tgctgccccctag-ttaattcgtcgtcgattctgaaacaactggcacaactg |
12526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 73 - 324
Target Start/End: Original strand, 18027 - 18277
Alignment:
| Q |
73 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgat |
172 |
Q |
| |
|
|||||||||||| || |||||||||| ||| || ||||| ||||| |||||||||||||||||| | ||| | ||||||| || |||||| |||| |
|
|
| T |
18027 |
gaatgctatggacgctggctctgtgagcgctctttactttcatgtaatgctgagggcgcttgacgatatcactcctgataccactgaacttttcaatgac |
18126 |
T |
|
| Q |
173 |
ttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagat |
272 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || ||| |||| ||||||||| ||||||||||||||| | |
|
|
| T |
18127 |
ttttggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggcgattcccatttctgctttgttttaggctggtacaagaggt |
18226 |
T |
|
| Q |
273 |
tactgccccctcgactggttcgccgtcgattctgcaacaactggcataactg |
324 |
Q |
| |
|
| ||||||||| | | |||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
18227 |
tgctgccccctag-ttaattcgtcgtcgattctgaaacaactggcacaactg |
18277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 73 - 375
Target Start/End: Original strand, 14562226 - 14562533
Alignment:
| Q |
73 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgat |
172 |
Q |
| |
|
|||||||||||| || |||||||||| ||| || ||||| |||||| ||||||||||| |||||||| ||| | |||| || || |||||| |||| |
|
|
| T |
14562226 |
gaatgctatggacgctggctctgtgagcgctctttactttgatgtaatgctgagggcgattgacggtatcactcctgatgccactgaacttttcaatgac |
14562325 |
T |
|
| Q |
173 |
ttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagat |
272 |
Q |
| |
|
|| ||||||||||||||||| ||||| |||||||| |||||||| ||||||| ||| ||||| ||| ||||||||| ||||||||||||||||| || | |
|
|
| T |
14562326 |
ttttggtctcttttggagacgaaaaatgttgcgcgttatcgcagggagataataggaggggattcccatttccgcttcgtttcaggctggtacaaaaggt |
14562425 |
T |
|
| Q |
273 |
tactgccccctcgac-----tggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccct |
367 |
Q |
| |
|
| |||||||| | | | |||||||||||||||||||||||||||| ||||| || |||||| | || || ||||||||||| | ||| ||| |
|
|
| T |
14562426 |
tgctgccccccccccccagttaattcgccgtcgattctgcaacaactggcacaactgccctggagatggactaaggcgcaactatcgaggatttcatcct |
14562525 |
T |
|
| Q |
368 |
gctgagga |
375 |
Q |
| |
|
|||||||| |
|
|
| T |
14562526 |
gctgagga |
14562533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 77 - 402
Target Start/End: Original strand, 13284372 - 13284697
Alignment:
| Q |
77 |
gctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttct |
176 |
Q |
| |
|
|||||||| || |||||||||| ||| || ||||| |||||| |||||||||||||||||||| ||| | ||||||| || ||| || |||| || | |
|
|
| T |
13284372 |
gctatggacgctggctctgtgagcgctctttactttgatgtaatgctgagggcgcttgacggtatcactcctgataccactgaactcttcaatgactttt |
13284471 |
T |
|
| Q |
177 |
ggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattact |
276 |
Q |
| |
|
|||||||||||||||| || || ||||| || |||||||| |||||||| || |||||| || ||| ||||| |||||||||||||||||||| || || |
|
|
| T |
13284472 |
ggtctcttttggagacgaagaatgttgctcgttatcgcagggagataacgggaggggactcctattttcgcttcgtttcaggctggtacaagaggttgct |
13284571 |
T |
|
| Q |
277 |
gccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccctgctgaggac |
376 |
Q |
| |
|
|||||| | |||| || |||||||||||||||||||| ||||| || ||||| |||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
13284572 |
gcccccctagttaattcgtcgccgattctgcaacaactggcacaactgccctggagatgggttgagacgcaactatcgaggaattcatcctgctgaggat |
13284671 |
T |
|
| Q |
377 |
gagcaatatgatctccagcgcttctg |
402 |
Q |
| |
|
|| | ||| |||| ||||||||||| |
|
|
| T |
13284672 |
gaactatacaatcttcagcgcttctg |
13284697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 14741960 - 14742024
Alignment:
| Q |
77 |
gctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgt |
141 |
Q |
| |
|
||||||||||| |||||||||| ||| || ||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
14741960 |
gctatggatgctggctctgtgagcgcgctctactttgatgtcatgctgagggcgcttgatggtgt |
14742024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 74 - 324
Target Start/End: Complemental strand, 19584 - 19335
Alignment:
| Q |
74 |
aatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatt |
173 |
Q |
| |
|
||||||||||| || |||||||||| ||| || ||||| |||||| | |||| |||| |||||||| ||| | |||| || || |||||| |||| | |
|
|
| T |
19584 |
aatgctatggacgctggctctgtgagcgctctttactttgatgtaattctgatggcgattgacggtatcactcctgatgccactgaacttttcaatgact |
19485 |
T |
|
| Q |
174 |
tctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagatt |
273 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| ||| ||||| ||| |||||||||||||||||||| || |
|
|
| T |
19484 |
tttggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggggattcccatttccacttcgtttcaggctggtacaagaggtt |
19385 |
T |
|
| Q |
274 |
actgccccctcgactggttcgccgtcgattctgcaacaactggcataactg |
324 |
Q |
| |
|
|||||||| | | |||| ||||||||||||||||||||||| ||||| |
|
|
| T |
19384 |
gctgccccc-cagttaattcgtcgtcgattctgcaacaactggcacaactg |
19335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 13746 - 13680
Alignment:
| Q |
73 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggt |
139 |
Q |
| |
|
|||||||||||| || |||||||||| ||| || ||||| |||||| ||||||||||| |||||||| |
|
|
| T |
13746 |
gaatgctatggacgctggctctgtgagcgctctttactttgatgtaatgctgagggcgattgacggt |
13680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 73 - 375
Target Start/End: Complemental strand, 36167 - 35865
Alignment:
| Q |
73 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgat |
172 |
Q |
| |
|
|||||||||||| || || || || | ||| || ||||| |||||| |||||||||||||||||||| ||| | ||||| | || ||| || |||| |
|
|
| T |
36167 |
gaatgctatggacgctggttccgtaaacgctctttactttgatgtaatgctgagggcgcttgacggtatcactcctgatatcactgaactcttcaatgac |
36068 |
T |
|
| Q |
173 |
ttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagat |
272 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| |||||||| ||||||||||| |||||| ||| || ||||| |||||||||||||||||||| | |
|
|
| T |
36067 |
ttctggtctcttttggagacaaagaatgttgcgcgttatcgcagggagataacaggaggggactcccactttcgcttcgtttcaggctggtacaagaggt |
35968 |
T |
|
| Q |
273 |
tactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggttatcaccctgctga |
372 |
Q |
| |
|
| ||||| || | | |||| || |||||||||||||||||||| ||||| | ||||| ||||||| ||||||||||| | ||| |||||||| |
|
|
| T |
35967 |
tgctgccgccccagttaattcgtcgccgattctgcaacaactggcacaactgccctagagatgggctgagacgcaactatcgagggtttcatcctgctga |
35868 |
T |
|
| Q |
373 |
gga |
375 |
Q |
| |
|
||| |
|
|
| T |
35867 |
gga |
35865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 28855 - 28605
Alignment:
| Q |
20 |
caattcatgctagaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctctgtgaccgccctgtacttcgatgtac |
119 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| || | | ||| | ||| |||||||| || |||||||| | ||| || ||||| |||||| |
|
|
| T |
28855 |
caattcatgctagatgttgagccatgcattcctaccgtcaagcgtttgcttaggaacgctatggacgctggctctgtaagcgctctttactttgatgtaa |
28756 |
T |
|
| Q |
120 |
tgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagaga |
219 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||||| || ||| || ||| || ||||||||||||||||| ||||| |||||||| |||||||| || |
|
|
| T |
28755 |
tgctgagggcgcttgacggtatcactcatgataccactgaactcttcattgacttttggtctcttttggagacgaaaaatgttgcgcgttatcgcaggga |
28656 |
T |
|
| Q |
220 |
gataacaggcggggacacccgtttccgctttgtttcaggctggtacaagag |
270 |
Q |
| |
|
||||||||| |||||| ||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
28655 |
gataacaggaggggactcccattttcgcttcgtttcaggctggtacaagag |
28605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0282 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0282
Description:
Target: scaffold0282; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 2148 - 2215
Alignment:
| Q |
74 |
aatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgt |
141 |
Q |
| |
|
|||||||||||||| |||||||||| || || ||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
2148 |
aatgctatggatgctggctctgtgagcgtgctctactttgatgtcatgctgagggcgcttgatggtgt |
2215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 9340 - 9278
Alignment:
| Q |
73 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttga |
135 |
Q |
| |
|
||||||||||||||||||||| |||| ||| || ||||| ||| | |||||||||||||||| |
|
|
| T |
9340 |
gaatgctatggatgccggctccgtgagcgcactctactttgatatcatgctgagggcgcttga |
9278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 384922 - 384860
Alignment:
| Q |
73 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttga |
135 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||| ||||| || ||||||||||||| |
|
|
| T |
384922 |
gaatgctatggatgccggctctgtgagcgagctctactttgatgtcatgttgagggcgcttga |
384860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 317
Target Start/End: Original strand, 121869 - 122013
Alignment:
| Q |
173 |
ttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagat |
272 |
Q |
| |
|
|||||||||||||| |||| | || |||||||| ||||||||||| || || || |||| |||| || || ||||| || |||||||| ||||||| |
|
|
| T |
121869 |
ttctggtctcttttaaggacacagaatgttgcgcgatatcgcagagacatcacgggaagggatacccactttcgttttgtctcgggctggtataagagat |
121968 |
T |
|
| Q |
273 |
tactgccccctcgactggttcgccgtcgattctgcaacaactggc |
317 |
Q |
| |
|
| || |||||| || |||| ||||||||||||| |||||||| |
|
|
| T |
121969 |
tgcttcccccttagttgattcgtcgtcgattctgcagcaactggc |
122013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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