View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10031_low_8 (Length: 316)

Name: NF10031_low_8
Description: NF10031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10031_low_8
NF10031_low_8
[»] chr1 (5 HSPs)
chr1 (11-301)||(10624082-10624370)
chr1 (15-301)||(20770667-20770961)
chr1 (15-215)||(21095649-21095854)
chr1 (53-177)||(21087320-21087444)
chr1 (234-301)||(21087489-21087556)
[»] scaffold0096 (1 HSPs)
scaffold0096 (21-301)||(44099-44384)
[»] chr3 (1 HSPs)
chr3 (11-95)||(32616444-32616528)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 301
Target Start/End: Original strand, 10624082 - 10624370
Alignment:
Q  11 cagagaggacaatacaagccaaggctgtgactataatcatacgcaaaggattgaaagcagtcacaaaaacaggtcccatagttttaattacagagccttg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10624082 cagagaggacaatacaagccaaggctgtgactataatcatacgcaaaggattaaaagcagtcacaaaaacaggtcccatagttttaattacagagccttg 10624181  T
Q  111 cacataaaattgaattgctgaagttacaattccctgtattaaacattagaagaaaaaatgtcagaaacaacattagaatacctgtttaatattgtaactt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10624182 cacataaaattgaattgctgaagttacaattccctgtattaaacattagaagaaaaaatgtcagaaacaacattagaatacctgtttaatattgtaattt 10624281  T
Q  211 ggacctagcatcttnnnnnnnntaaaattgagttgggtgtgcgagtgtagatgggatcattggcccattattgataggtcattgctcttta 301  Q
    ||||||||||||||         |||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  10624282 ggacctagcatcttaaaaaaac-aaaatt-agttgggtgtgcgagtgtagatgggatcattgacacattattgataggtcattgctcttta 10624370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 301
Target Start/End: Original strand, 20770667 - 20770961
Alignment:
Q  15 gaggacaatacaagccaaggctgtgactataatcatacgcaaaggattgaaagcagtcacaaaaacaggtcccatagttttaattacagagccttgcaca 114  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||||| | |||||||| ||||||||||||| | |||||||||| ||| |||||||||||    
T  20770667 gaggaaaatacaagccaaggctctgactataatcattcgcaaaggagtaaaagcagtaacaaaaacaggtctcgtagttttaatgacatagccttgcaca 20770766  T
Q  115 taaaattgaattgctgaagttacaattccctgtattaaacattagaagaaaaaatgtcag---aaacaacattagaatacctgtttaatattgtaacttg 211  Q
    ||| ||||||||| ||| ||||  ||||| ||| | ||||||||||||||| ||||||||   ||| || |||||||||| || ||||| |||||||||     
T  20770767 taatattgaattgatgaggttaatattccttgtgtaaaacattagaagaaagaatgtcaggaaaaaaaaaattagaatacttgcttaatgttgtaactta 20770866  T
Q  212 gacctagcatctt-----nnnnnnnntaaaattgagttgggtgtgcgagtgtagatgggatcattggcccattattgataggtcattgctcttta 301  Q
    |||||| | ||||              ||||||||||||||| ||  |||  ||||||| |||||||||||||||||||||||||||||| ||||    
T  20770867 gacctaacttcttaaaaataaaaaataaaaattgagttgggtttgttagttcagatgggctcattggcccattattgataggtcattgcttttta 20770961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 21095854 - 21095649
Alignment:
Q  15 gaggacaatacaagccaaggctgtgactataatcatacgcaaaggattgaaagcagtcacaaaaacaggtcccatagttttaattacagagccttgcaca 114  Q
    ||||| |||||| ||||| ||||||||||||||||| || |||||| | |||||||| ||||||||||||||  |||||||||| ||| |||||||||||    
T  21095854 gaggaaaatacatgccaaagctgtgactataatcattcgtaaaggagtaaaagcagtaacaaaaacaggtcctgtagttttaatgacatagccttgcaca 21095755  T
Q  115 taaaattgaattgct-----gaagttacaattccctgtattaaacattagaagaaaaaatgtcagaaacaacattagaatacctgtttaatattgtaact 209  Q
    ||| ||||||||| |     || ||||| ||||||||| | |||||||||||||||||||| ||||||||| | |||||||| || ||||| ||||||||    
T  21095754 taatattgaattgatttgatgaggttactattccctgtgtaaaacattagaagaaaaaatgccagaaacaaaactagaatacttgcttaatgttgtaact 21095655  T
Q  210 tggacc 215  Q
    ||||||    
T  21095654 tggacc 21095649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 21087320 - 21087444
Alignment:
Q  53 gcaaaggattgaaagcagtcacaaaaacaggtcccatagttttaattacagagccttgcacataaaattgaattgctgaagttacaattccctgtattaa 152  Q
    |||||||| | |||||||| |||||||||| |||  |||||||||| ||| |||||||||||||| ||||||||| ||| ||||| ||||| ||| | ||    
T  21087320 gcaaaggagtaaaagcagtaacaaaaacagttcctgtagttttaatgacatagccttgcacataatattgaattgatgaggttactattccttgtgtaaa 21087419  T
Q  153 acattagaagaaaaaatgtcagaaa 177  Q
    ||||||||||||| |||||||||||    
T  21087420 acattagaagaaagaatgtcagaaa 21087444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 21087489 - 21087556
Alignment:
Q  234 aaaattgagttgggtgtgcgagtgtagatgggatcattggcccattattgataggtcattgctcttta 301  Q
    ||||||||||||||| ||  |||  ||||||| |||||||||||||||||||||||||||||| ||||    
T  21087489 aaaattgagttgggtttgttagttcagatggggtcattggcccattattgataggtcattgcttttta 21087556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 301
Target Start/End: Original strand, 44099 - 44384
Alignment:
Q  21 aatacaagccaaggctgtgactataatcatacgcaaaggattgaaagcagtcacaaaaacaggtcccatagttttaattacagagccttgcacataaaat 120  Q
    |||||||||||| |||||||||  |||||| ||||||||| | |||||||||||||||||||| ||| ||| |||||| ||  |||||||||||||| ||    
T  44099 aatacaagccaaagctgtgactgcaatcatccgcaaaggagtaaaagcagtcacaaaaacaggccccgtagctttaatgacgtagccttgcacataatat 44198  T
Q  121 tgaattgctgaagttacaattccctgtattaaacattagaagaaaaaatgtcagaaacaacattagaatacctgtttaatattgtaacttggacctagca 220  Q
    |||||||  || ||||| ||||||| | | ||||||||||||||||||||||| |||||| | | |||||| || ||||| |||||||||||||||| |     
T  44199 tgaattgacgatgttactattccctatgtaaaacattagaagaaaaaatgtcacaaacaaaacttgaatacttgcttaatgttgtaacttggacctaact 44298  T
Q  221 tctt-----nnnnnnnntaaaattgagttgggtgtgcgagtgtagatgggatcattggcccattattgataggtcattgctcttta 301  Q
    ||||              ||||||||||||||| ||  |||  ||||||| |||||||||||||||||||| ||||||||| ||||    
T  44299 tcttaaaaataaaaaataaaaattgagttgggtctgttagttcagatgggctcattggcccattattgataagtcattgcttttta 44384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 32616444 - 32616528
Alignment:
Q  11 cagagaggacaatacaagccaaggctgtgactataatcatacgcaaaggattgaaagcagtcacaaaaacaggtcccatagtttt 95  Q
    |||||||||  || ||||||| ||| || || || |||||||| | |||||| |||||||| |||| ||| ||||||||||||||    
T  32616444 cagagaggatgatgcaagccagggccgttacgatgatcatacgtacaggattaaaagcagttacaataactggtcccatagtttt 32616528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University