View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10031_low_9 (Length: 257)
Name: NF10031_low_9
Description: NF10031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10031_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 17252889 - 17252658
Alignment:
| Q |
18 |
attttcctgttaaataaagagtatttactaggaacataatccgtagtgcaattttggtagcatatcctatattttcttgttgttctatgcactttgcaat |
117 |
Q |
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| T |
17252889 |
attttcctgttaaataa-gagtatttactaggaacacaatccgtagtgcaattttggtagcatatcctatattttcttgtagttctatgcactttgtaat |
17252791 |
T |
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| Q |
118 |
gaaaaatttccaacaaagtcagtcttgatgctacccaaataaagacggtcctcaaactcaatagctgaagttacaaaattattatcaccaaactctttga |
217 |
Q |
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| T |
17252790 |
gaaaatttttcaacaaagtcagtcttgatactacccaaataaagacggtcctcaaactcaatagttgaagttacaaaattattatcaccaaactctttga |
17252691 |
T |
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| Q |
218 |
taatattgccttcagtatccactttcaccacca |
250 |
Q |
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| T |
17252690 |
taatattgccttcagtatccactttcaccacca |
17252658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 98 - 250
Target Start/End: Complemental strand, 18491330 - 18491163
Alignment:
| Q |
98 |
tgttctatgcactttgcaatgaaaaatttccaacaaagtcagtcttgatgctacccaaataaagacggtcctcaaactcaatagctgaagttacaaa--- |
194 |
Q |
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| T |
18491330 |
tgttctatgcactttgcaatggaaattttccaacaaagtcacacttaatactacccaaataaagatggtcctcaaactcaatggctgaagttacaaaatc |
18491231 |
T |
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| Q |
195 |
------------attattatcaccaaactctttgataatattgccttcagtatccactttcaccacca |
250 |
Q |
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| T |
18491230 |
aataatcttcccattatcatcaccaaactttttgataatattgccttcaatatccactttcaccacca |
18491163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 195
Target Start/End: Complemental strand, 18510176 - 18510080
Alignment:
| Q |
99 |
gttctatgcactttgcaatgaaaaatttccaacaaagtcagtcttgatgctacccaaataaagacggtcctcaaactcaatagctgaagttacaaaa |
195 |
Q |
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| T |
18510176 |
gttctatgcattttgcagtggaaatttcccaacaaaatcagtattaagactacctaagtaaagattgtcctcaaactcaacagctgaagttacaaaa |
18510080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 18510062 - 18510010
Alignment:
| Q |
198 |
attatcaccaaactctttgataatattgccttcagtatccactttcaccacca |
250 |
Q |
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| T |
18510062 |
attatcaccaaacttttttataatattgccttcagttgtcactttcaccacca |
18510010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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