View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10032_1 (Length: 1161)

Name: NF10032_1
Description: NF10032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10032_1
NF10032_1
[»] chr4 (8 HSPs)
chr4 (28-464)||(29265892-29266325)
chr4 (965-1161)||(29269413-29269619)
chr4 (526-643)||(29266423-29266540)
chr4 (824-953)||(29269127-29269256)
chr4 (631-738)||(29268934-29269041)
chr4 (883-952)||(31187488-31187557)
chr4 (903-953)||(3039156-3039206)
chr4 (904-953)||(624554-624603)
[»] chr7 (1 HSPs)
chr7 (896-953)||(42433039-42433096)
[»] chr5 (2 HSPs)
chr5 (860-953)||(41179750-41179844)
chr5 (904-953)||(37104144-37104193)


Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 28 - 464
Target Start/End: Original strand, 29265892 - 29266325
Alignment:
Q  28 ccatttgtgttgataaagtttgtgagccacttgtttgtagtggctgttgttgccatgagtttatgtgtgaaggaagaacatgaggggagaatgaaaatgg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29265892 ccatttgtgttgataaagtttgtgagccacttgtttgtagtggctgttgttgccatgagtttatgtgtgaaggaagaacatgaggggagaatgaaaatgg 29265991  T
Q  128 aaagatgaaactaaatacttgagttgaacttgaagaggcaaagtgagaaagaaagaaagacagtggtggttcatgttgttgtttcaaagtgatatggttt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29265992 aaagatgaaactaaatacttgagttgaacttgaagaggcaaagtgagaaagaaagaaagacagtggtggttcatgttgttgtttcaaagtgatatggttt 29266091  T
Q  228 ggtgggcccatttaattagtttgtgttcttgatttcattaggattattagaatactttacaaaattgagtagtattaagaaaattgttctaatagtctaa 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29266092 ggtgggcccatttaattagtttgtgttcttgatttcattaggattattagaatactttacaaaattgagtagtattaagaaaattgttctaatagtctaa 29266191  T
Q  328 aatgagtgctaagaataaaaagagaggtgatgtgatacacttcaaccaacaacatttgggttaatctttaaaatagtgacatattgatatgcaatgttcc 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29266192 aatgagtgctaagaataaaaagagaggtgatgtgatacacttcaac---caacatttgggttaatctttaaaatagtgacatattgatatgcaatgttcc 29266288  T
Q  428 cttctttggttctaagtatgttaaaggtagcttaagg 464  Q
    |||||||||||||||||||||||||||||||||||||    
T  29266289 cttctttggttctaagtatgttaaaggtagcttaagg 29266325  T

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Target: chr4; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 965 - 1161
Target Start/End: Original strand, 29269413 - 29269619
Alignment:
Q  965 acaggtctagaattttctatatttnnnnnnntaattcttgtattcacagtattgaaatatatgaatatgtatgttaattcatttttatacgtgatatcac 1064  Q
    ||||||||||||||||||||||||       ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29269413 acaggtctagaattttctatatttaaaaaaataattcttgtattcacattattgaaatatattaatatgtatgttaattcatttttatacgtgatatcac 29269512  T
Q  1065 g----------gggtctttatgttttcttggttacaacctcttaggactttttagcacccacttatttgttcaattgatgcctttgattgtttgaattat 1154  Q
               |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29269513 aagctatcaccgggtctttatgttttcttggttacaaccacttaggactttttagcccccacttatttgttcaattgatgcctttgattgtttgaattat 29269612  T
Q  1155 tgtcact 1161  Q
    |||||||    
T  29269613 tgtcact 29269619  T

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Target: chr4; HSP #3
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 526 - 643
Target Start/End: Original strand, 29266423 - 29266540
Alignment:
Q  526 cccaatattgatgaataataaaaggtgttggttgggaaaatctattttgagtttaatttcactaactgcttccttaaattcattgggacaatcttcattc 625  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||    
T  29266423 cccaatattgatggataataaaaggtgttggttgggaagatctattttgagtttaacttcactgactgcttccttaaattcattgggacagtcttcattc 29266522  T
Q  626 ttaagaagtggcattatt 643  Q
    |||| |||||||||||||    
T  29266523 ttaataagtggcattatt 29266540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 824 - 953
Target Start/End: Original strand, 29269127 - 29269256
Alignment:
Q  824 ggtcgtccacgtgatcttaacttggttgataaggacattgaatactatatgcagagcctgggttcgaatcagagacacttcacttcttcatatttagaat 923  Q
    ||||||||||||||||||||||||||||||||| |||||| ||| ||||||||| | |  |||||||||||| |||||||||||||||||||||||||||    
T  29269127 ggtcgtccacgtgatcttaacttggttgataagaacattgcatattatatgcagggtcgaggttcgaatcagggacacttcacttcttcatatttagaat 29269226  T
Q  924 gtgtaagctctaaccactaaactatttgac 953  Q
    ||||||| |||||| |||| ||||||||||    
T  29269227 gtgtaagttctaactactagactatttgac 29269256  T

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Target: chr4; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 631 - 738
Target Start/End: Original strand, 29268934 - 29269041
Alignment:
Q  631 aagtggcattattgttgtctttgattagtgnnnnnnnntgagagaaaacatcacatatatgaaaatatcttttttctagaggtgaaaatatgctttattt 730  Q
    |||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29268934 aagtggcattattgttgtgtttgattagtgtaaaaaaatgagagaaaacatcacatatatgaaaatatcttttttctataggtgaaaatatgctttattt 29269033  T
Q  731 aatgtgtc 738  Q
    ||||||||    
T  29269034 aatgtgtc 29269041  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 883 - 952
Target Start/End: Complemental strand, 31187557 - 31187488
Alignment:
Q  883 gggttcgaatcagagacacttcacttcttcatatttagaatgtgtaagctctaaccactaaactatttga 952  Q
    |||||||||||  ||||||| ||||| | || ||||| ||||||| ||||||||||||||||||||||||    
T  31187557 gggttcgaatcccagacactccacttatccacatttaaaatgtgtgagctctaaccactaaactatttga 31187488  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 903 - 953
Target Start/End: Complemental strand, 3039206 - 3039156
Alignment:
Q  903 tcacttcttcatatttagaatgtgtaagctctaaccactaaactatttgac 953  Q
    ||||||||||||||||| ||||||| ||||  ||||||||||||| |||||    
T  3039206 tcacttcttcatatttaaaatgtgtgagcttcaaccactaaactacttgac 3039156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 904 - 953
Target Start/End: Original strand, 624554 - 624603
Alignment:
Q  904 cacttcttcatatttagaatgtgtaagctctaaccactaaactatttgac 953  Q
    ||||||| || ||||| ||||||| ||||||||||||||||||| |||||    
T  624554 cacttctccacatttaaaatgtgtgagctctaaccactaaactacttgac 624603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 896 - 953
Target Start/End: Complemental strand, 42433096 - 42433039
Alignment:
Q  896 agacacttcacttcttcatatttagaatgtgtaagctctaaccactaaactatttgac 953  Q
    |||||||||| |||| |||||||| ||||||||||||||||||||||||||| |||||    
T  42433096 agacacttcatttctccatatttaaaatgtgtaagctctaaccactaaactacttgac 42433039  T

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Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 860 - 953
Target Start/End: Complemental strand, 41179844 - 41179750
Alignment:
Q  860 attgaatactatatgcag-agcctgggttcgaatcagagacacttcacttcttcatatttagaatgtgtaagctctaaccactaaactatttgac 953  Q
    |||| ||| ||||||||| |||| |||||||||||   |||||| ||||||| || ||||| | ||||| ||||||| ||||||||||| |||||    
T  41179844 attgcatattatatgcaggagccggggttcgaatcccggacactccacttctccacatttaaattgtgtgagctctagccactaaactacttgac 41179750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 904 - 953
Target Start/End: Original strand, 37104144 - 37104193
Alignment:
Q  904 cacttcttcatatttagaatgtgtaagctctaaccactaaactatttgac 953  Q
    |||||||||||||||| ||||||| |||| ||||||||| | ||||||||    
T  37104144 cacttcttcatatttaaaatgtgtgagctttaaccactagattatttgac 37104193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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