View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10032_2 (Length: 634)
Name: NF10032_2
Description: NF10032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10032_2 |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 146 - 615
Target Start/End: Original strand, 43166283 - 43166752
Alignment:
| Q |
146 |
acgatttatgattggttgactgacactcgctgttcgaataaaatctggtttgcttcttcccagtttccaataaggtgatcattctgggtgctaattcaag |
245 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43166283 |
acgatttatgattggttgactgacactcgctgttcgaataaaatctggtttgcttcttcccagtttccaataaggtgatcatgctgggtgctaattcaag |
43166382 |
T |
|
| Q |
246 |
aataaagcaggaactcgagtcnnnnnnncaagaattccgctatgaagaagtatacagaattaccagaaactttaagacggttttggggaaaggagcatct |
345 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43166383 |
aataaagcaggaactcgagtcaaaaaaacaagaattccgctacgaagaagtatacagaattaccagaaactttaagacggttttggggaaaggagcatct |
43166482 |
T |
|
| Q |
346 |
ggaacagtctaccacggctggattgaccatgatactgaggttgctgtcaaaatgctgtcttcctcatcagctcaaggatatctgcaatttcaagcagagg |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43166483 |
ggaacagtctaccacggctggattgaccatgatactgaggtagctgtcaaaatgctgtcttcctcatcagctcaaggatatctgcaatttcaagcagagg |
43166582 |
T |
|
| Q |
446 |
ttatatgattaattcacattcaaattttatcatgcctatgtgtgtgtgtatagatagttaatgaattttatgttaactaaatatggttttcctttgtgat |
545 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
43166583 |
ttatatgattaattcacattcaaattttatcatgcctatgtgtgtgtgtatagatagttaatgaatttaatgttaactaaatatggtttttctttgtgat |
43166682 |
T |
|
| Q |
546 |
tcataggccaaattttttgctacagttcatcataaatacttgaccagtcttataggttactgtgatgatg |
615 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43166683 |
tcataggccaaattttttgctacagttcatcataaatacttgaccagtcttataggttactgtgatgatg |
43166752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 181 - 615
Target Start/End: Complemental strand, 43221629 - 43221193
Alignment:
| Q |
181 |
gaataaaatctg-gtttgcttcttcccagtttccaataaggtgatcattctgggtgctaattcaagaataaagcaggaactcgagtcnnnnnnncaagaa |
279 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
43221629 |
gaataaaaactgtgtttgcttcttcccagtttcccataaggtgatcaagctgggtgctaattcaagaataaagcaggaactagagtcgaagaaacaagaa |
43221530 |
T |
|
| Q |
280 |
ttccgctatgaagaagtatacagaattaccagaaactttaagacggttttggggaaaggagcatctggaacagtctaccacggctggattgaccatgata |
379 |
Q |
| |
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||| |||||||||||||| |||||||||||||||||| ||| |||| | ||||||||||||||||||||||||||||| ||||||||||| ||| ||| |
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| T |
43221529 |
ttcacctatgaagaagtattaagaattaccagaaactttgagaaggttatagggaaaggagcatctggaacagtctaccatggctggattgatcataata |
43221430 |
T |
|
| Q |
380 |
ctgaggttgctgtcaaaatgctgtcttcctcatcagctcaaggatatctgcaatttcaagcagaggttatatgattaattcacattcaaatttta--tca |
477 |
Q |
| |
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| ||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||||||| ||| |||||||||| | | ||||||| | | |
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| T |
43221429 |
ca-------ctgtcaaaatgctatcttccttatctgctcaaggatttctgcaatttcaagcagaggttgtatcattaattcacttgccaattttagttaa |
43221337 |
T |
|
| Q |
478 |
tg-----ccta-tgtgtgtgtgtatagatagttaatgaattttatgttaactaaatatggttttcctttgtgattcataggccaaattttttgctacagt |
571 |
Q |
| |
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|| |||| | |||||| || | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43221336 |
tgtgaatcctaatctgtgtgcgtgtgtatagttaatgaatttaatgttaactaaatatggtttttctttgtgattcataggccaaattttttgctacagt |
43221237 |
T |
|
| Q |
572 |
tcatcataaatacttgaccagtcttataggttactgtgatgatg |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43221236 |
tcatcataaatacttgaccagtcttataggttactgtgatgatg |
43221193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 229 - 459
Target Start/End: Original strand, 43175352 - 43175582
Alignment:
| Q |
229 |
ctgggtgctaattcaagaataaagcaggaactcgagtcnnnnnnncaagaattccgctatgaagaagtatacagaattaccagaaactttaagacggttt |
328 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| || ||||||||||||||| | | |||| |
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| T |
43175352 |
ctgggtgcttattcaagaataaagcaggaactagagtcaaagaaacaagaattcagctatgaagaagtattaagcattaccagaaactttgaaaaggttg |
43175451 |
T |
|
| Q |
329 |
tggggaaaggagcatctggaacagtctaccacggctggattgaccatgatactgaggttgctgtcaaaatgctgtcttcctcatcagctcaaggatatct |
428 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
43175452 |
tggggaaaggagcatctggaacagtctaccatggctggattgatcataataccgaggtagctgtcaaaatgctatcttcctcatcagctcaaggatatct |
43175551 |
T |
|
| Q |
429 |
gcaatttcaagcagaggttatatgattaatt |
459 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |
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| T |
43175552 |
gcaatttcaagcagaggtagtatcattaatt |
43175582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 43165905 - 43166033
Alignment:
| Q |
24 |
gttgggagccaaacatgtataaaaatataggatttaattgctatgtaatgtaaatttaaaaatcttttacactttcaactagatatatattatcttaagt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43165905 |
gttgggagccaaacatgtataaaaatataggatttaattgctatgtaatgtaaatttaaaaatcttttacactttcaactagatatatattatcttaagt |
43166004 |
T |
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| Q |
124 |
gtgacaatttccaatgaatatgacgattt |
152 |
Q |
| |
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||||||||||| ||||||| ||||||||| |
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| T |
43166005 |
gtgacaatttctaatgaatgtgacgattt |
43166033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 35 - 178
Target Start/End: Complemental strand, 43221812 - 43221668
Alignment:
| Q |
35 |
aacatgtataaaaatataggatttaattgctatgtaatgtaaatttaaaaatcttttacactttc-aactagatatatattatcttaagtgtgacaattt |
133 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| || ||||| |||||| ||||||| | ||||||||| |
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| T |
43221812 |
aacatgtataaaaatataggatttaattggtatgcgatgtaaatttaaaaatctcttacactgtcaaactaattatataccatcttaaatatgacaattt |
43221713 |
T |
|
| Q |
134 |
ccaatgaatatgacgatttatgattggttgactgacactcgctgt |
178 |
Q |
| |
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| |||||| ||| |||| ||||||||||||||||||||| |||| |
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| T |
43221712 |
cacatgaatgtgaagattaatgattggttgactgacactctctgt |
43221668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 527 - 615
Target Start/End: Original strand, 43175653 - 43175741
Alignment:
| Q |
527 |
tatggttttcctttgtgattcataggccaaattttttgctacagttcatcataaatacttgaccagtcttataggttactgtgatgatg |
615 |
Q |
| |
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|||||||||||||| ||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||| | |||||||||| |
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| T |
43175653 |
tatggttttcctttctgattcacaggccaaactttttgctgtggttcatcataaatacttgacaggtcttatagggttttgtgatgatg |
43175741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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