View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10032_3 (Length: 423)
Name: NF10032_3
Description: NF10032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10032_3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 37797207 - 37796813
Alignment:
| Q |
1 |
acccaaacaacccagataggaatgccataaaaagcaccttccaagtaatctttggtcttttcctcctgcatacaagaaaaaaggaaaaccaaattttgcc |
100 |
Q |
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| T |
37797207 |
acccaaacaacccagataggaatgccataaaaagcaccttccaagtaatctttggtcttttcctcctgcatacaagaaaaaaggaaaaccaaattttgcc |
37797108 |
T |
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| Q |
101 |
tagttaatctaaagcacgagtctcatgttactttgagaattggtaaattcatctccaaaattgtaatagcattattcataaaggtctagtcattaagtcg |
200 |
Q |
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| T |
37797107 |
tagttaatctaaagcacgagtctcatgttactttgagaattggtaaattcatctccaaaattgtaatagcattattcataaaggtctagtcattaagtcg |
37797008 |
T |
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| Q |
201 |
tgctcttaaaagctataacatgacactataacaaaatatgtcacgtttcactttgatctcatcactaccacttttagcataggttaatcgacatatagat |
300 |
Q |
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| T |
37797007 |
tgctcttaaaagctataac------------------atgtcacgtttcactttgatctcatcactaccacttttagcataggttaatcgacatatagat |
37796926 |
T |
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| Q |
301 |
gaagtttatgttattgtat-gacctctatataaaagaaaaaattggggggtttgttgcagtagtttactctcttttattgatgaaaaatttattgattaa |
399 |
Q |
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| T |
37796925 |
gaagtttatgttattgtatggacttctatat-----------ggggggggtttgttgcagtagtttactctcttttattgatgaaaaatttattgattaa |
37796837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 37788978 - 37788850
Alignment:
| Q |
1 |
acccaaacaacccagataggaatgccataaaaagcaccttccaagtaatctttggtcttttcctcctgcatacaagaaaaaaggaaaaccaaattttgcc |
100 |
Q |
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| T |
37788978 |
acccaaacaatccgcatagaaatgccagagaaagcacattccgagtaatctttggtctttccttcctgcataacagaaagaaaaaaaaacgaatttggcc |
37788879 |
T |
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| Q |
101 |
tagttaatctaaagcacgagtctcatgtta |
130 |
Q |
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| T |
37788878 |
tagttaatctactgcacga-tctcatgtta |
37788850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 37807397 - 37807340
Alignment:
| Q |
1 |
acccaaacaacccagataggaatgccataaaaagcaccttccaagtaatctttggtct |
58 |
Q |
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| T |
37807397 |
acccaaacaatccacatagaaatgaaagaaaaagaaccttccaagtaatctttggtct |
37807340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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