View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10032_6 (Length: 371)
Name: NF10032_6
Description: NF10032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10032_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 27 - 264
Target Start/End: Complemental strand, 17736315 - 17736084
Alignment:
| Q |
27 |
aacatgtagatttacttaccaagataaatgttacctggtgtaactctatctagagggggcgtgttgaatccacctaaattaaattcaatataaatcatgt |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17736315 |
aacatgtagatttacttaccaagataaatgttacctggtgtaactctatctagagggggcgtgttgaatccacctaaattaaattcaatataaatcatgt |
17736216 |
T |
|
| Q |
127 |
actataagtctatgatttatcttttcctaatcttatgcaaatcctttacttagcgtaggattcatgttttgtcatattctgcaacnnnnnnnnnnntcgt |
226 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17736215 |
actatgagtctatgatttatcttttcctaatcttacgcaaatcctttccttagcgtaggattcatgttttgtcatattctgcaa------aaaaaatcgt |
17736122 |
T |
|
| Q |
227 |
tataaagattacctccgggaagaagaagattattactt |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17736121 |
tataaagattacctccgggaagaagaagatttttactt |
17736084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 252 - 363
Target Start/End: Complemental strand, 17736073 - 17735962
Alignment:
| Q |
252 |
aagattattacttgatcacgtaagtaaataaatgtggacccaatagattaattattatatttggtatcaaaatacaaattggcacttgatatcaaattat |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
17736073 |
aagattattacttgatcacgtaagtaaataaatgtggacccaatagattaattattatatttggtatcaaaatacaaattgccacttgatatcaaatgat |
17735974 |
T |
|
| Q |
352 |
tatgtctctgct |
363 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17735973 |
tatgtctctgct |
17735962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University