View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10032_7 (Length: 342)
Name: NF10032_7
Description: NF10032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10032_7 |
 | |
|
| [»] scaffold0536 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 48962669 - 48962997
Alignment:
| Q |
1 |
agacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48962669 |
agacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgt |
48962768 |
T |
|
| Q |
101 |
gacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaatgagtccatttgtttttagcattgtctcatgcac |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48962769 |
gacccgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgttgacaatgagtccatttgtttttagcattgtctcatgcac |
48962868 |
T |
|
| Q |
201 |
catttccatgaatccggtgaatgacttcggcggctttgtgcacaaggtgaaagagtgaggaaaatttggaacaactaacgaatccaaatctgtgtgagat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
48962869 |
catttccatgaatccggtgaatgacttcggcggctttgtgcacaaggtgatagagtgaggaaaatttggaacaacgaacaaatccaaatctgtgtgagat |
48962968 |
T |
|
| Q |
301 |
ttcaatgaggggtttattctaagggattc |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
48962969 |
ttcaatgaggggtttattctaagggattc |
48962997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 48958540 - 48958794
Alignment:
| Q |
19 |
acaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgt |
118 |
Q |
| |
|
|||||| |||||| |||||| |||| ||||||||||| || || ||||||||||||| | ||||| ||||||||| |||||||||| ||| |||||| || |
|
|
| T |
48958540 |
acaacattctcatttcccctctctgatttctcttgaatggtttggcgaataagagaagcaggaccaagatgccaaaccttgtgacccgtgattttcttgt |
48958639 |
T |
|
| Q |
119 |
agtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaatgagtccatttgtttttagcattgtctcatgcaccatttccatgaatccggt |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||| ||| |||||||| || |||| || ||||||||| ||| |||||||||||||||||| |
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|
| T |
48958640 |
agtgttcgatgcactcttcaccatcaagttcaatgaagttgttgatgatgagtcccttacttttgaggattgtctcaagcatcatttccatgaatccggt |
48958739 |
T |
|
| Q |
219 |
gaatgacttcggcggctttgtgcacaaggtgaaagagtgaggaaaatttggaaca |
273 |
Q |
| |
|
|||| ||| ||||||||||| |||||||||| || |||||||||||||||||| |
|
|
| T |
48958740 |
gaatatctttggcggctttgtacacaaggtgatggaatgaggaaaatttggaaca |
48958794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 176
Target Start/End: Original strand, 48965706 - 48965879
Alignment:
| Q |
3 |
acactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtga |
102 |
Q |
| |
|
||||||||| |||| ||| ||||||| |||||||| ||||||||||||||||| | ||| |||||||||||| ||||||| |||||||||||||| ||| |
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|
| T |
48965706 |
acactcttgcacgctcactgcactctcttgtcccctctctgctttctcttgaacagttttacgaataagagaagctggaccaagatgccaagccttatga |
48965805 |
T |
|
| Q |
103 |
cctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaatgagtccatt |
176 |
Q |
| |
|
|| ||| | || | || | || ||| ||||||| |||||||| |||||||| ||| |||||||||||||||| |
|
|
| T |
48965806 |
cccgtgctactcacataatatttaatgtactcttccccgtcaagctcagcgaaattgttgacaatgagtccatt |
48965879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 48912129 - 48911981
Alignment:
| Q |
18 |
cacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcg |
117 |
Q |
| |
|
|||||||||||| | ||| || || || |||||||||| | | |||||||||||||| ||||||| ||||||||||| ||||||| || ||||||||| |
|
|
| T |
48912129 |
cacaacactctcttctcctctctcagccttctcttgaatagttctgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcg |
48912030 |
T |
|
| Q |
118 |
tagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaa |
166 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| || ||| |||||| |
|
|
| T |
48912029 |
tagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaa |
48911981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 48951668 - 48951727
Alignment:
| Q |
60 |
tttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgta |
119 |
Q |
| |
|
|||||||| |||||| | ||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
48951668 |
tttgcgaacaagagaggccggaccaagatgccaagccttgtgaccgatggttttctcgta |
48951727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 12589970 - 12589696
Alignment:
| Q |
1 |
agacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgt |
100 |
Q |
| |
|
||||||||||| ||| |||||||||||||| |||||| ||||||||||||||||| | |||| ||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
12589970 |
agacactcttgcacgttcacaacactctcatttcccctatctgctttctcttgaacagttttgtgaataagagaagctggaccaagatgccaagccttgt |
12589871 |
T |
|
| Q |
101 |
gacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaatgagtccatttgtttttagcattgtctcatgcac |
200 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||||| || |||||||||||||||||| | |||||||||||||| |||| || |||| |||| ||| |
|
|
| T |
12589870 |
gacctgtggttttctcatagtgtttgacacactcttggccatcaagttcagcgaagttgttaacaatgagtccattacttttgagtattgcctcaagcat |
12589771 |
T |
|
| Q |
201 |
catttccatgaatccggtgaatgacttcggcggctttgtgcacaaggtgaaagagtgaggaaaatttggaacaac |
275 |
Q |
| |
|
| ||||||||| | ||||||| | ||| || || || ||||| ||||||| | |||||||||||||||||||| |
|
|
| T |
12589770 |
cgtttccatgacttcggtgaacgcctttggtggattagtgcataaggtgatacgatgaggaaaatttggaacaac |
12589696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 275
Target Start/End: Complemental strand, 12483264 - 12482991
Alignment:
| Q |
2 |
gacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtg |
101 |
Q |
| |
|
||||||| || |||| |||||||||||| | |||||| ||||| || |||||||| | || | |||||| ||| |||||| | ||||||||||||||| |
|
|
| T |
12483264 |
gacactcatgcacgctcacaacactctcgtttcccctctctgccttttcttgaacagtttcacaaataagtgaatgtggacctaaatgccaagccttgtg |
12483165 |
T |
|
| Q |
102 |
acctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaatgagtccatttgtttttagcattgtctcatgcacc |
201 |
Q |
| |
|
||| || |||| ||||||||||||| ||| |||| || || ||||||| |||| | |||| ||||||| ||| |||| | ||||| ||| ||| | |
|
|
| T |
12483164 |
acccatgattttttcgtagtgttcgacgcattctttgccatccagttcagtgaagctattgacgatgagtctattacttttgtgtattgtttcaagcatc |
12483065 |
T |
|
| Q |
202 |
atttccatgaatccggtgaatgacttcggcggctttgtgcacaaggtgaaagagtgaggaaaatttggaacaac |
275 |
Q |
| |
|
||||| | |||| ||||| ||| || || |||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
12483064 |
atttctaggaatattgtgaacatctttggtggttttgtgcacaaggtgatatggtgaggaaaatttggaacaac |
12482991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 13440607 - 13440733
Alignment:
| Q |
33 |
tcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcgatgcac |
132 |
Q |
| |
|
|||||| |||||||||||||||| || ||| |||||||||||| |||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||| |
|
|
| T |
13440607 |
tcccctctctgctttctcttgaatggttttacgaataagagaagttggaccgagatgccaaaccttgtgacccgtggttttctcatagtgttggatgcac |
13440706 |
T |
|
| Q |
133 |
tcttcaccgtcaagttcagcgaagttg |
159 |
Q |
| |
|
||||| ||||||||||||| ||||||| |
|
|
| T |
13440707 |
tcttctccgtcaagttcagtgaagttg |
13440733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 13448755 - 13448896
Alignment:
| Q |
18 |
cacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcg |
117 |
Q |
| |
|
|||| ||| ||||| |||||| |||| |||||||||| | | |||||||||||||||| |||||| ||||||||| |||||||||| |||| ||||||| |
|
|
| T |
13448755 |
cacagcaccctcatttcccctctctgatttctcttgagcagttttgcgaataagagaagttggaccaagatgccaaaccttgtgacccgtggctttctcg |
13448854 |
T |
|
| Q |
118 |
tagtgttcgatgcactcttcaccgtcaagttcagcgaagttg |
159 |
Q |
| |
|
||||||| ||||||||||| || ||||||||| ||||||| |
|
|
| T |
13448855 |
tagtgttgtatgcactcttctccatcaagttcactgaagttg |
13448896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 13455241 - 13455367
Alignment:
| Q |
33 |
tcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcgatgcac |
132 |
Q |
| |
|
|||||| |||| ||| |||||||||| | ||| |||||||||| |||||| | ||||||| ||||||||||||| ||||| |||||||||| ||||||| |
|
|
| T |
13455241 |
tcccctctctgatttttcttgaacggttctgcaaataagagaagttggaccaatatgccaaaccttgtgacctgttgttttttcgtagtgttggatgcac |
13455340 |
T |
|
| Q |
133 |
tcttcaccgtcaagttcagcgaagttg |
159 |
Q |
| |
|
||||| || |||| |||| ||||||| |
|
|
| T |
13455341 |
tcttctccatcaaattcactgaagttg |
13455367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 6312 - 6162
Alignment:
| Q |
1 |
agacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgt |
100 |
Q |
| |
|
|||||||| || || | ||||||||| | |||||||| | |||||| |||||||| | | | |||||||||||| | ||||| ||||||||||| |||| |
|
|
| T |
6312 |
agacactcatgcacactcacaacactttgttgtcccctctgtgctttttcttgaacagttctacgaataagagaagccggaccaagatgccaagctttgt |
6213 |
T |
|
| Q |
101 |
gacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcag |
151 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6212 |
gacctgtagttttctcgtagtgttcgatgtactcttcaccgtcaagttcag |
6162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 10296 - 10148
Alignment:
| Q |
1 |
agacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgt |
100 |
Q |
| |
|
|||||||| || || | ||||||||||| | ||| || |||| |||||||||||| | | | |||| |||| || |||||| ||||||||||| || | |
|
|
| T |
10296 |
agacactcatgcacactcacaacactctgttctcctctctctgttttctcttgaacagttctacgaacaagataagctggactaagatgccaagctttct |
10197 |
T |
|
| Q |
101 |
gacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttc |
149 |
Q |
| |
|
|||| || ||||||| ||||||||||||| || || |||||||||||| |
|
|
| T |
10196 |
gacccgtagttttcttgtagtgttcgatgtgctatttaccgtcaagttc |
10148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 28385748 - 28385867
Alignment:
| Q |
40 |
tctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcgatgcactcttcac |
139 |
Q |
| |
|
||||||||||||||||| | ||| ||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||||||| || |||||||| | |
|
|
| T |
28385748 |
tctgctttctcttgaacagttttacgaataaaggaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgtttgacacactcttctc |
28385847 |
T |
|
| Q |
140 |
cgtcaagttcagcgaagttg |
159 |
Q |
| |
|
| ||||||||| | |||||| |
|
|
| T |
28385848 |
catcaagttcaacaaagttg |
28385867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 27 - 168
Target Start/End: Original strand, 12541086 - 12541227
Alignment:
| Q |
27 |
ctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcg |
126 |
Q |
| |
|
||||| |||||| ||||||||||||||| | ||| |||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
12541086 |
ctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttgg |
12541185 |
T |
|
| Q |
127 |
atgcactcttcaccgtcaagttcagcgaagttgctgacaatg |
168 |
Q |
| |
|
| |||||||| || ||||||||| | |||||| ||| |||| |
|
|
| T |
12541186 |
acacactcttctccatcaagttcaacaaagttgttgataatg |
12541227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 159
Target Start/End: Complemental strand, 12641223 - 12641124
Alignment:
| Q |
60 |
tttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttg |
159 |
Q |
| |
|
||||||||||||| || |||||| |||||||||||||||| ||| |||||||||| ||||||| |||||| |||||||| ||||||||| | |||||| |
|
|
| T |
12641223 |
tttgcgaataagacaagttggaccaagatgccaagccttgtaacccatggttttctcatagtgtttgatgcaatcttcaccatcaagttcaacaaagttg |
12641124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 3417257 - 3417171
Alignment:
| Q |
78 |
tggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgac |
164 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||| ||||||| || |||||||| || ||||||||| ||||||| |||| |
|
|
| T |
3417257 |
tggaccaagatgccaagccttgtgacctacggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgac |
3417171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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