View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10032_8 (Length: 337)
Name: NF10032_8
Description: NF10032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10032_8 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 127 - 337
Target Start/End: Complemental strand, 3089243 - 3089033
Alignment:
| Q |
127 |
aatgttatctaaattatcaataaaatttttagttaaacacattgaaaaaagtgactgtaagaaagtgttgagtcccgtaaacgatccatacaaataaccc |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3089243 |
aatgttatctaaattatcaataaaatttttagttaaacacattgaaaaaagtgattgtaagaaagtgttgagtccggtaaacgatccatacaaataaccc |
3089144 |
T |
|
| Q |
227 |
tagaacatacattgtcaatgttattttaagtattaagaacctgaaatgtgggttagaggttgtagtgtttagatggataaggaggtaaaataatatgtaa |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3089143 |
tagaacatacattgtcaatgttattttaagtattaagaacctgaaatgtgggttagaggttgtagtgtttagatggataaggaggtaaaataatatgtaa |
3089044 |
T |
|
| Q |
327 |
gcctatatgtt |
337 |
Q |
| |
|
||||||||||| |
|
|
| T |
3089043 |
gcctatatgtt |
3089033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 3089341 - 3089312
Alignment:
| Q |
29 |
tgtatattatatctaaaaggaatgcatgca |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3089341 |
tgtatattatatctaaaaggaatgcatgca |
3089312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University