View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10033_high_1 (Length: 485)
Name: NF10033_high_1
Description: NF10033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10033_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 4529486 - 4529104
Alignment:
| Q |
1 |
atgtcagtgcaaactgtaatgcattatgagatgataaaaaacgtgttttatttccaatgtttgcttcttctccttcagctatgacatattcattcccgac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4529486 |
atgtcagtgcaaactgtaatgcattatgagatgataaaaaacgtgttttgtttccaatgtttgcttcttctccttcagccatgacatattcattcccgac |
4529387 |
T |
|
| Q |
101 |
cattaactgtgctagatcatgcataaggtcatgcattctacaattactaatgtcaccataatcgtctacaatgatatcctgaaagaaggacattgacagc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| ||||||| || |||||||||||||||||| |
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| T |
4529386 |
cattagctgtgctagatcatgcataaggtcatgcattttacaattacaaatgtcaccacaatcgtctacagtgatatcttggaagaaggacattgacagc |
4529287 |
T |
|
| Q |
201 |
aaactcatgaagtactcatggccaacatcttctacgcgtctaacatcatttgatggttgaatgaaccccttagctgcccataactgaatgagtgttttct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
4529286 |
aaactcatgaagtactcatggccaacatcttctacacgtctaacatcatttgatggttggataaacccctcagctgcccataactgaatgagtgttttct |
4529187 |
T |
|
| Q |
301 |
tttcaaacacaaaacctttaggaaacaatgaacaat-ataaaaacattttttcagaaacgacggaagatgatcataactcagt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
4529186 |
tttcaaacacaaaacctttaggaaacaatgaacaataagcaaaacatttttttagaaacgatggaagatgatcataactcagt |
4529104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 28 - 382
Target Start/End: Original strand, 4398434 - 4398789
Alignment:
| Q |
28 |
gagatgataaaaaacgtgttttatttccaatgtttgcttcttctccttcagctatgacatattcattcccgaccattaactgtgctagatcatgcataag |
127 |
Q |
| |
|
||||||| ||| |||||||||| ||| |||||||| ||||||||||||| | | ||||||||||| |||| || || || ||||||| |||||||| |
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|
| T |
4398434 |
gagatgacaaataacgtgttttgttttcaatgtttagttcttctccttcaaccacgacatattcatccccggtcactacttgcgctagataatgcataat |
4398533 |
T |
|
| Q |
128 |
gtcatgcattctacaattactaatgtcaccataatcgtctacaatgatatcctgaaagaaggacattgacagcaaactcatgaagtactcatggccaaca |
227 |
Q |
| |
|
|||||||||| |||| |||| || ||||| ||||||||| | | | ||| ||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
4398534 |
gtcatgcattttacaggtacttattccaccacaatcgtctatagtaacatctcgaaagaaagacattgacagcaaactcatgaagtactcatgaccaaca |
4398633 |
T |
|
| Q |
228 |
tcttctacgcgtctaacatcatttgatggttgaatgaaccccttagctgcccataactgaatgagtgttttcttttcaaacacaaaacctttaggaaaca |
327 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |
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| T |
4398634 |
tcttctacacgtctaacatcatttgattgttgaatgaacccctcagctacccataactgaatgagtgtcttcttttcaaacataaaaccttttggaaaca |
4398733 |
T |
|
| Q |
328 |
atgaacaata-taaaaacattttttcagaaacgacggaagatgatcataactcagt |
382 |
Q |
| |
|
||||||||| ||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4398734 |
gtgaacaataggcaaagcactttttcagaaacgacggaagatgatcataactcagt |
4398789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 28 - 382
Target Start/End: Complemental strand, 4498208 - 4497853
Alignment:
| Q |
28 |
gagatgataaaaaacgtgttttatttccaatgtttgcttcttctccttcagctatgacatattcattcccgaccattaactgtgctagatcatgcataag |
127 |
Q |
| |
|
||||||| ||| |||||||| | ||||| |||||| ||||||||||||| | | |||||||||||||||| || || || |||||||||||||||| |
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|
| T |
4498208 |
gagatgacaaataacgtgttctgtttcctatgtttagttcttctccttcaaccacgacatattcattcccggtcactagttgcgctagatcatgcataat |
4498109 |
T |
|
| Q |
128 |
gtcatgcattctacaattactaatgtcaccataatcgtctacaatgatatcctgaaagaaggacattgacagcaaactcatgaagtactcatggccaaca |
227 |
Q |
| |
|
|||||||||| |||| |||| || ||||| ||||||||| | | ||| |||||||| |||||||||||||||||||||||||||||||| |||||| |
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|
| T |
4498108 |
gtcatgcattttacaggtacttattccaccacaatcgtctatagaaacatcttgaaagaaagacattgacagcaaactcatgaagtactcatgaccaaca |
4498009 |
T |
|
| Q |
228 |
tcttctacgcgtctaacatcatttgatggttgaatgaaccccttagctgcccataactgaatgagtgttttcttttcaaacacaaaacctttaggaaaca |
327 |
Q |
| |
|
|||||||| | ||||| |||||||||| ||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||| ||||||||| ||||||| |
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|
| T |
4498008 |
tcttctacacatctaatatcatttgattgttgaatgaacccctcagctacccataactgaatcagtgtcttcttttcaaacataaaaccttttggaaaca |
4497909 |
T |
|
| Q |
328 |
atgaacaata-taaaaacattttttcagaaacgacggaagatgatcataactcagt |
382 |
Q |
| |
|
||||||||| ||| || ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4497908 |
gtgaacaataggcaaagcacttttttagaaacgacggaagatgatcataactcagt |
4497853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 28 - 382
Target Start/End: Complemental strand, 4519268 - 4518913
Alignment:
| Q |
28 |
gagatgataaaaaacgtgttttatttccaatgtttgcttcttctccttcagctatgacatattcattcccgaccattaactgtgctagatcatgcataag |
127 |
Q |
| |
|
||||||| ||| |||||||| | ||||| |||||| ||||||||||||| | | ||||||||||||| || || || || |||||||||| ||||| |
|
|
| T |
4519268 |
gagatgacaaataacgtgttctgtttcctatgtttagttcttctccttcaaccacgacatattcattctcggtcactagttgcgctagatcatacataat |
4519169 |
T |
|
| Q |
128 |
gtcatgcattctacaattactaatgtcaccataatcgtctacaatgatatcctgaaagaaggacattgacagcaaactcatgaagtactcatggccaaca |
227 |
Q |
| |
|
|||||||||| |||| | || || || || ||||||||| | | | ||| |||||||| |||||||||||||||||||||||||||||||| |||| | |
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|
| T |
4519168 |
gtcatgcattttacaggtgcttattccatcacaatcgtctatagtaacatcttgaaagaaagacattgacagcaaactcatgaagtactcatgaccaata |
4519069 |
T |
|
| Q |
228 |
tcttctacgcgtctaacatcatttgatggttgaatgaaccccttagctgcccataactgaatgagtgttttcttttcaaacacaaaacctttaggaaaca |
327 |
Q |
| |
|
|||||||| | ||||| |||||||||| |||||| |||||||| |||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |
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|
| T |
4519068 |
tcttctacacatctaatatcatttgattgttgaacgaacccctcagctacccataactgaatgagtgtcttcttttcaaacataaaaccttttggaaaca |
4518969 |
T |
|
| Q |
328 |
atgaacaata-taaaaacattttttcagaaacgacggaagatgatcataactcagt |
382 |
Q |
| |
|
||||||||| ||| || ||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
4518968 |
gtgaacaataggcaaagcacttttttagaaacgatggaagatgatcataactcagt |
4518913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 379 - 465
Target Start/End: Original strand, 4534551 - 4534637
Alignment:
| Q |
379 |
cagtccattaccttggtgagatagagaatgttcatcttattattggatgcataagcttacaaataaaggaactgctttcttcttttt |
465 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| |
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|
| T |
4534551 |
cagttcattaccttggtgagatagagaatgttcatcttattattggatgtataagcttacaaataaaggaactgctttttttttttt |
4534637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 8e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 28 - 382
Target Start/End: Complemental strand, 18046892 - 18046537
Alignment:
| Q |
28 |
gagatgataaaaaacgtgttttatttccaatgtttgcttcttctccttcagctatgacatattcattcccgaccattaactgtgctagatcatgcataag |
127 |
Q |
| |
|
||||||| ||| |||||||||| ||| |||||||| ||||||||||||| | | ||||||||||| |||| || || || ||||||| |||||||| |
|
|
| T |
18046892 |
gagatgacaaataacgtgttttgttttcaatgtttagttcttctccttcaaccacgacatattcatccccggtcactacttgcgctagataatgcataat |
18046793 |
T |
|
| Q |
128 |
gtcatgcattctacaattactaatgtcaccataatcgtctacaatgatatcctgaaagaaggacattgacagcaaactcatgaagtactcatggccaaca |
227 |
Q |
| |
|
|||||||||| |||| |||| || ||||| ||||||||| | | | ||| ||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18046792 |
gtcatgcattttacaggtacttattccaccacaatcgtctatagtaacatctcgaaagaaagacattgacagcaaactcatgaagtactcatgaccaaca |
18046693 |
T |
|
| Q |
228 |
tcttctacgcgtctaacatcatttgatggttgaatgaaccccttagctgcccataactgaatgagtgttttcttttcaaacacaaaacctttaggaaaca |
327 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
18046692 |
tcttctacacgtctaacatcatttgattgttgaatgaacccctcagctacccataactgaatgagtgtcttcttttcaaacataaaaccttttggaaaca |
18046593 |
T |
|
| Q |
328 |
atgaacaata-taaaaacattttttcagaaacgacggaagatgatcataactcagt |
382 |
Q |
| |
|
||||||||| ||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18046592 |
gtgaacaataggcaaagcactttttcagaaacgacggaagatgatcataactcagt |
18046537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 28 - 382
Target Start/End: Original strand, 18034261 - 18034616
Alignment:
| Q |
28 |
gagatgataaaaaacgtgttttatttccaatgtttgcttcttctccttcagctatgacatattcattcccgaccattaactgtgctagatcatgcataag |
127 |
Q |
| |
|
||||||| ||| |||||||| | ||||| |||||| ||||||||||||| | | ||||||||||||| || || || || |||||||||| ||||| |
|
|
| T |
18034261 |
gagatgacaaataacgtgttctgtttcctatgtttagttcttctccttcaaccacgacatattcattctcggtcactagttgcgctagatcatacataat |
18034360 |
T |
|
| Q |
128 |
gtcatgcattctacaattactaatgtcaccataatcgtctacaatgatatcctgaaagaaggacattgacagcaaactcatgaagtactcatggccaaca |
227 |
Q |
| |
|
|||||||||| |||| | || || || || ||||||||| | | | ||| |||||||| |||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
18034361 |
gtcatgcattttacaggtgcttattccatcacaatcgtctatagtaacatcttgaaagaaagacattgacagcaaactcatgaagtactcatgaccaata |
18034460 |
T |
|
| Q |
228 |
tcttctacgcgtctaacatcatttgatggttgaatgaaccccttagctgcccataactgaatgagtgttttcttttcaaacacaaaacctttaggaaaca |
327 |
Q |
| |
|
|||||||| | ||||| |||||||||| |||||| |||||||| |||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
18034461 |
tcttctacacatctaatatcatttgattgttgaacgaacccctcagctacccataactgaatgagtgtcttcttttcaaacataaaaccttttggaaaca |
18034560 |
T |
|
| Q |
328 |
atgaacaata-taaaaacattttttcagaaacgacggaagatgatcataactcagt |
382 |
Q |
| |
|
||||||||| ||| || ||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
18034561 |
gtgaacaataggcaaagcacttttttagaaacgatggaagatgatcataactcagt |
18034616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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