View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10033_high_2 (Length: 322)
Name: NF10033_high_2
Description: NF10033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10033_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 52709262 - 52708993
Alignment:
| Q |
1 |
taaagaaataacagccatgcctgagaaatgatgacgctcaatgacagattgcagacaaatatttgatgtaagcaagtaaaaactaacatgacatgaagca |
100 |
Q |
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| T |
52709262 |
taaagaaatagcagccatgcctgagaaatgatgacgctcaatgacagattgcagacaaatatttgatgtaagcaagtaaaaactaacatgacatgaagca |
52709163 |
T |
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| Q |
101 |
agagtcgttaaaaagaaagtacctggtaaatctgtactggaaaagctggcaaacatccctcccaaacccaagatcttagaatgagaagtgctgctggaaa |
200 |
Q |
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| T |
52709162 |
agagtggttaaaaagaaagtacctggtaaatctgtactggaaaagctggcaaacatccctcccaaacccaagatcttagaatgagaagtgctgctggaaa |
52709063 |
T |
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| Q |
201 |
aagcaggaatagcagagcagttctatcctgaacaaaagatgtgccgttttcataaaagtttcacaaacat |
270 |
Q |
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| T |
52709062 |
aagcaggaatagcagagcagttctatcctgaacaaaagatgtgccattttcataaaagtttcacaaacat |
52708993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 322
Target Start/End: Complemental strand, 52708974 - 52708941
Alignment:
| Q |
289 |
cgcggatgggcatcagcaataaggtgtgggatat |
322 |
Q |
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| T |
52708974 |
cgcggatgggcatcagcaataaggtgtgggatat |
52708941 |
T |
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