View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10033_low_2 (Length: 512)
Name: NF10033_low_2
Description: NF10033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10033_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 4e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 40376163 - 40375974
Alignment:
| Q |
11 |
gaagcataggtgtcttttagctcttccaaatttgaatagaacaaacattaattctcattataagtgttttgtttcaaacattttatttaaaatgatgaat |
110 |
Q |
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| T |
40376163 |
gaagcataggtgtcttttagctcttccaaatttgaatagaacaaacattaattctcattacaagtgttttgtttgaaacattttatttaaaatgatgaat |
40376064 |
T |
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| Q |
111 |
ttacattaaaaatcaatataataataattgtttttgtaataatgttttcatttatgaaatggtattattaatctattaatgtgatattgt |
200 |
Q |
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| T |
40376063 |
ttacattaaaaatcaatataataataattgtttttgtaataatgttttcatttatgaaatggtattattaatctattaatgtgatattgt |
40375974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 271 - 495
Target Start/End: Complemental strand, 40375903 - 40375676
Alignment:
| Q |
271 |
tcttaccaaatgagtgttaccttacacatatttataatgaaatagttatatttttt-aggtcaagtagtctatagtgtctataaattcacctcttaaaat |
369 |
Q |
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| T |
40375903 |
tcttaccaaatgagtgttaccttacacatatttataatgaaatagttatatttttttaggtcaagtagtctatagtgtctataaattcacctcttaaaat |
40375804 |
T |
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| Q |
370 |
aaataagtgagatgtcagaagttcgaattcaaaccttcacatata--tataattcaattttgttaccaattgatccatgttttccaggactaatgaaaaa |
467 |
Q |
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| T |
40375803 |
aaataagtgagatgtcagaggttcaaattcaaacctttacatatatatataatgcaatgttgttaccaattgatccatgttttccggaactaatgaaaaa |
40375704 |
T |
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| Q |
468 |
gttattaactccattcatcccacaatat |
495 |
Q |
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| T |
40375703 |
gttattaactccattcatcccacaatat |
40375676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 41181183 - 41181232
Alignment:
| Q |
330 |
tcaagtagtctatagtgtctataaattcacctcttaaaataaataagtgaga |
381 |
Q |
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| T |
41181183 |
tcaagtagtctat--tggctataaattcacctcttaagatgaataagtgaga |
41181232 |
T |
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