View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10033_low_4 (Length: 437)
Name: NF10033_low_4
Description: NF10033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10033_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 305
Target Start/End: Original strand, 6173744 - 6174040
Alignment:
| Q |
13 |
cagagtgcagtcttacgaaagagaacatgtagaacggtggatattatgtttttgttaggtattttgattttagatgtgggatgtgcagtcttcnnnnnnn |
112 |
Q |
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| T |
6173744 |
cagagtgcagtcttacgagagagaacatgtggagcggtggatattatgttttagttagatattttgattttagatgtgggatgtgcagtcttcaaaaaaa |
6173843 |
T |
|
| Q |
113 |
cataaaagcacttgttttaagaattcgtgcatgtatatgtcgcaccatttagcattgctgattttattttaatcaaactttctccctacacaaaagatg- |
211 |
Q |
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| T |
6173844 |
cataaaagcacttgttttaagaattcgtgcatgtatatgtcgcaccatttagcattgctgattttattttaatcaaactttctccctacacaaaagatga |
6173943 |
T |
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| Q |
212 |
--aataagagttagagttctctcca-nnnnnnnacctctcaattttctccattattatagttttggacaccctaaaacatttaatttatttagcaat |
305 |
Q |
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| T |
6173944 |
ttaataagagttagagttctctccattttttttatctctcaattttctccattattatagttttggacaccctaaaacatttaatttatttagcaat |
6174040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 329 - 420
Target Start/End: Original strand, 6174040 - 6174131
Alignment:
| Q |
329 |
taataactgctagggggagaatgtttgttatagtgcttggcaacaacggcaaacagtggaagcgttaatataattaaccactagcacagcat |
420 |
Q |
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| T |
6174040 |
taataactgctagggggagaatgtttgttatagtgcttggcaacaacggcaaacagtggaagcgttaatataattaaccactagcacagcat |
6174131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 175
Target Start/End: Complemental strand, 6142488 - 6142449
Alignment:
| Q |
136 |
ttcgtgcatgtatatgtcgcaccatttagcattgctgatt |
175 |
Q |
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| T |
6142488 |
ttcgtgcatatatatgtcgcaccatttagcattactgatt |
6142449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 7740275 - 7740435
Alignment:
| Q |
13 |
cagagtgcagtcttacgaaagagaacatgtagaacggtggatattatgtttttgttaggtattttgattttagatgtgggatgtgcagtcttcnnnnnnn |
112 |
Q |
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|||||||||||||||| ||||| ||||||| || ||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||||| |
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| T |
7740275 |
cagagtgcagtcttacaaaagataacatgtggagcggtggatactatgtttttgtttgatattttgtttttagatgtgggatgtgcagtcttaaaaaaaa |
7740374 |
T |
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| Q |
113 |
cataaaagcacttgttttaagaattcgtgcatgtatatgtcgcaccatttagcattgctgat |
174 |
Q |
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| T |
7740375 |
cat-agagcacttgttttaagaattcgtgcatgtataagtagcgctatttagcattgctgat |
7740435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 24710145 - 24710053
Alignment:
| Q |
13 |
cagagtgcagtcttacgaaagagaacatgtagaacggtggatattatgtttttgttaggtattttgattttagatgtgggatgtgcagtcttc |
105 |
Q |
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||||||||| ||||| ||||| ||||||| || |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
24710145 |
cagagtgcaatcttaaaaaagataacatgtggagcggtggatattatgtttttgtttgatattttgattttagatgtgggatgtgcagtcttc |
24710053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 11941041 - 11941073
Alignment:
| Q |
136 |
ttcgtgcatgtatatgtcgcaccatttagcatt |
168 |
Q |
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| T |
11941041 |
ttcgtgcatatatatgtcgcaccatttagcatt |
11941073 |
T |
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