View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10033_low_6 (Length: 321)

Name: NF10033_low_6
Description: NF10033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10033_low_6
NF10033_low_6
[»] chr1 (4 HSPs)
chr1 (159-310)||(46314562-46314713)
chr1 (19-126)||(46314718-46314825)
chr1 (221-309)||(46315321-46315409)
chr1 (260-310)||(14228093-14228143)
[»] chr8 (2 HSPs)
chr8 (216-306)||(37810365-37810455)
chr8 (260-305)||(37811028-37811073)
[»] chr7 (5 HSPs)
chr7 (43-106)||(1468693-1468759)
chr7 (223-270)||(43302566-43302613)
chr7 (160-207)||(45638503-45638550)
chr7 (224-294)||(45638408-45638478)
chr7 (27-76)||(45638640-45638690)
[»] chr3 (1 HSPs)
chr3 (27-82)||(16253828-16253884)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 159 - 310
Target Start/End: Complemental strand, 46314713 - 46314562
Alignment:
Q  159 attgtaattagaggaagaagatgagtgattcaagggaagaatttcagggagaggacaaacaataattttgagattgggtacaacaactcacttaaccaat 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46314713 attgtaattagaggaagaagatgagtgattcaagggaagaatttcagggagaggacgaacaataattttgagattgggtacaacaactcacttaaccaat 46314614  T
Q  259 cttttaatctcagcccttcacttttaatctaatggctgcaattcattcctat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46314613 cttttaatctcagcccttcacttttaatctaatggctgcaattcattcctat 46314562  T

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Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 46314825 - 46314718
Alignment:
Q  19 atgagcaaaaaattcaacaataaatttcagatttatcaatctgttcttttcccaaaaacaaaaattaattgagaaaacaaatttgtgtgccaatttgagt 118  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46314825 atgagcaaaaagttcaacaataaatttcagatttattaatctgttcttttcccaaaaacaaaaattaattgagaaaacaaatttgtgtgccaatttgagt 46314726  T
Q  119 catgggtt 126  Q
    ||||||||    
T  46314725 catgggtt 46314718  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 46315321 - 46315409
Alignment:
Q  221 taattttgagattgggtacaacaactcacttaaccaatcttttaatctcagcccttcacttttaatctaatggctgcaattcattccta 309  Q
    ||||||| ||||||||| |||||||||| |||||| ||||||||||||||||||||   |||||||||||||| | ||||| |||||||    
T  46315321 taattttaagattgggtgcaacaactcatttaacccatcttttaatctcagccctttcattttaatctaatggatacaatttattccta 46315409  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 14228093 - 14228143
Alignment:
Q  260 ttttaatctcagcccttcacttttaatctaatggctgcaattcattcctat 310  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14228093 ttttaatctcagcccttcacttttaatctaatggatgcaattcattcctat 14228143  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 306
Target Start/End: Complemental strand, 37810455 - 37810365
Alignment:
Q  216 aacaataattttgagattgggtacaacaactcacttaaccaatcttttaatctcagcccttcacttttaatctaatggctgcaattcattc 306  Q
    ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37810455 aacaataatttggagattgtgtacaacaactcacttaacctatcttttaatctcagcccttcacttttaatctaatggctgtaattcattc 37810365  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 37811028 - 37811073
Alignment:
Q  260 ttttaatctcagcccttcacttttaatctaatggctgcaattcatt 305  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  37811028 ttttaatctcagcccttcacttttaatctaatggatgcaattcatt 37811073  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 1468759 - 1468693
Alignment:
Q  43 tttcagatttatcaatctgttcttttcccaaaaacaaaa---attaattgagaaaacaaatttgtgt 106  Q
    |||||||||||| ||| ||||||||||| ||||| ||||   | |||||||||||||||||||||||    
T  1468759 tttcagatttattaatttgttcttttccaaaaaaaaaaacataataattgagaaaacaaatttgtgt 1468693  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 43302613 - 43302566
Alignment:
Q  223 attttgagattgggtacaacaactcacttaaccaatcttttaatctca 270  Q
    |||| |||||||||||||||||| ||||||||| ||||| ||||||||    
T  43302613 atttggagattgggtacaacaacccacttaacccatcttctaatctca 43302566  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 45638550 - 45638503
Alignment:
Q  160 ttgtaattagaggaagaagatgagtgattcaagggaagaatttcaggg 207  Q
    |||||||||||||||||||||||||  ||| |||||||||||| ||||    
T  45638550 ttgtaattagaggaagaagatgagttgttctagggaagaatttgaggg 45638503  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 45638478 - 45638408
Alignment:
Q  224 ttttgagattgggtacaacaactcacttaaccaatcttttaatctcagcccttcacttttaatctaatggc 294  Q
    |||||||||||||||||||||  || |||| | ||| |||||||||| ||||||  ||||||||| |||||    
T  45638478 ttttgagattgggtacaacaagccatttaaaccatcatttaatctcatcccttcctttttaatctgatggc 45638408  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 45638690 - 45638640
Alignment:
Q  27 aaaattcaacaataaattt-cagatttatcaatctgttcttttcccaaaaa 76  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||||| |||||    
T  45638690 aaaattcaacaataaattttcagatttattaatttgttcttttccaaaaaa 45638640  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 16253884 - 16253828
Alignment:
Q  27 aaaattcaacaataaatttc-agatttatcaatctgttcttttcccaaaaacaaaaa 82  Q
    |||||||||||||||||||| |||||||| ||| ||||||||||| ||||| |||||    
T  16253884 aaaattcaacaataaatttccagatttattaatttgttcttttccaaaaaaaaaaaa 16253828  T

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