View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10033_low_8 (Length: 255)
Name: NF10033_low_8
Description: NF10033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10033_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 23522704 - 23522493
Alignment:
| Q |
1 |
taagtaaaaatagatcacagataacagactgaagatgatgctcaactatatagatatatggtagaggattaaataggtaatttatgatcacagtttgtgt |
100 |
Q |
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| T |
23522704 |
taagtgaaaatagatcacagataacagactgaagatgatgctcaactatatagatatatggtagaggattaaatagttaatttatgatcacagtttgtgt |
23522605 |
T |
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| Q |
101 |
acttctgggc-tttattttcctttgtaatggctatataaatgctactcaatattaaataatactagtaaatatcttctcttaaattcttttgcaagtaag |
199 |
Q |
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| T |
23522604 |
acttctgggcttttattttcctttgtaatggctatataaatgctactcaatattaaataatactagtacatatcttctcttaaattcttttgcaagtaag |
23522505 |
T |
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| Q |
200 |
aaagttctaagt |
211 |
Q |
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| T |
23522504 |
atagttctaagt |
23522493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 23517356 - 23517234
Alignment:
| Q |
11 |
tagatcacagataacagactgaagatgatgctcaactatatagatatatggtagaggattaaataggtaatttatgatcacagtttgtgtacttctgggc |
110 |
Q |
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||||||||||||||| || |||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||||| ||||||||| || | | |
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| T |
23517356 |
tagatcacagataactgatggaagatgatgctcaactataactatatatagtagaggatgaaatagttaatttatgatcatagtttgtgttctgc--gtt |
23517259 |
T |
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| Q |
111 |
tttattttcctttgtaatggctata |
135 |
Q |
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|||| |||||||||||||||||||| |
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| T |
23517258 |
tttactttcctttgtaatggctata |
23517234 |
T |
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