View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10033_low_9 (Length: 213)
Name: NF10033_low_9
Description: NF10033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10033_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 52200775 - 52200570
Alignment:
| Q |
1 |
caccactaccacactcaacaatatttgtgagtatatatagacacaattagaaatcagctaaatcaacagtaaactaaatcttccttctaaaacaatcaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52200775 |
caccactaccacactcaacaatatttgtgagtatatatagacacaattagaaatcagctaaatcaacagtaaactaaatcttccttctaaaacaatcaag |
52200676 |
T |
|
| Q |
101 |
atcgccgcaacgccaatggctcgtgcattcatattcaatcacagcactatgaaagccaccatcagccttttcttcctaatcctaaccaccaatttcttga |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52200675 |
atcgccgcaacgccaatggcccgtgcattcatattcaatcacagcactatgaaagccaccatcagccttttcttcctaatcctaaccaccaatttcttga |
52200576 |
T |
|
| Q |
201 |
tgtcca |
206 |
Q |
| |
|
| |||| |
|
|
| T |
52200575 |
tttcca |
52200570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University