View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10034_high_1 (Length: 720)

Name: NF10034_high_1
Description: NF10034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10034_high_1
NF10034_high_1
[»] chr3 (17 HSPs)
chr3 (91-461)||(30552508-30552879)
chr3 (492-704)||(30551934-30552146)
chr3 (384-524)||(39580382-39580522)
chr3 (365-524)||(41530123-41530282)
chr3 (337-524)||(42864754-42864937)
chr3 (384-524)||(959336-959476)
chr3 (384-522)||(39674648-39674786)
chr3 (317-511)||(21869343-21869534)
chr3 (370-524)||(25041826-25041980)
chr3 (365-524)||(29360229-29360389)
chr3 (390-472)||(4533993-4534075)
chr3 (399-507)||(27391082-27391187)
chr3 (418-481)||(53330248-53330311)
chr3 (418-481)||(53333932-53333995)
chr3 (418-481)||(53337609-53337672)
chr3 (450-494)||(22976274-22976318)
chr3 (454-524)||(51360636-51360706)
[»] chr7 (11 HSPs)
chr7 (315-524)||(22204695-22204912)
chr7 (315-524)||(22229827-22230044)
chr7 (315-522)||(15042633-15042848)
chr7 (350-524)||(26279360-26279534)
chr7 (365-524)||(25444096-25444255)
chr7 (365-524)||(19927685-19927843)
chr7 (365-524)||(40819361-40819519)
chr7 (361-506)||(22293350-22293495)
chr7 (388-524)||(45281303-45281439)
chr7 (413-524)||(30948048-30948159)
chr7 (317-421)||(30948558-30948670)
[»] scaffold0017 (1 HSPs)
scaffold0017 (365-524)||(37479-37638)
[»] chr5 (6 HSPs)
chr5 (350-524)||(13854108-13854282)
chr5 (384-524)||(36606630-36606770)
chr5 (365-524)||(8871733-8871892)
chr5 (350-524)||(6666185-6666359)
chr5 (399-524)||(32659410-32659535)
chr5 (325-427)||(29795575-29795677)
[»] chr8 (10 HSPs)
chr8 (365-524)||(17068664-17068823)
chr8 (365-524)||(17579450-17579609)
chr8 (365-524)||(20289828-20289987)
chr8 (365-524)||(21076458-21076617)
chr8 (385-524)||(10861257-10861396)
chr8 (371-524)||(17630596-17630749)
chr8 (365-524)||(29055054-29055213)
chr8 (388-524)||(34964199-34964335)
chr8 (399-568)||(44718037-44718206)
chr8 (384-524)||(3046221-3046358)
[»] chr4 (6 HSPs)
chr4 (363-522)||(32761020-32761179)
chr4 (365-524)||(26261669-26261829)
chr4 (419-524)||(54260604-54260709)
chr4 (399-474)||(51161613-51161689)
chr4 (594-652)||(26261347-26261405)
chr4 (315-356)||(32761199-32761240)
[»] chr2 (3 HSPs)
chr2 (385-524)||(14313835-14313974)
chr2 (350-524)||(14811765-14811939)
chr2 (384-522)||(13043277-13043410)
[»] chr6 (7 HSPs)
chr6 (384-524)||(21112585-21112725)
chr6 (384-568)||(1413847-1414032)
chr6 (350-524)||(8862520-8862695)
chr6 (370-524)||(9149640-9149794)
chr6 (385-520)||(34752388-34752523)
chr6 (389-439)||(9177118-9177169)
chr6 (363-422)||(33585167-33585226)
[»] chr1 (4 HSPs)
chr1 (317-522)||(22150057-22150270)
chr1 (370-524)||(3365949-3366103)
chr1 (365-469)||(1608473-1608577)
chr1 (430-521)||(23205680-23205771)


Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 91 - 461
Target Start/End: Complemental strand, 30552879 - 30552508
Alignment:
Q  91 aatcaatatttacattcattaagtcttaagagtataggtgtaaatttcactttgttttgtttgtatgtccattaacttaattgataacaaatcgactaat 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30552879 aatcaatatttacattcattaagtcttaagagtataggtgtaaatttcactttattttgtttgtatgtccattaacttaattgataacaaatcgactaat 30552780  T
Q  191 ctgcaaaaccatacttctattaatgttcggttagcttttaaatatgtctaactctaagaaaccatcaaagttcaactcgcataaactttttgtaactaaa 290  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30552779 ctgcaaaaccatacttctattaatgttcggttagcttttaaatctgtctaactctaagaaaccatcaaagttcaacttgcataaactttttgtaactaaa 30552680  T
Q  291 agaatgata-aaaatgtgtgctgcaatctatgaaaccccgatatctgacacgatacggatacgataccgacatgagaaatttttcaaaacacctgatacg 389  Q
    ||||||||| ||||||||||||||| |||||||| || |||||||||||||||| ||||||||||||||| ||||||||||||||||||| || ||||||    
T  30552679 agaatgataaaaaatgtgtgctgcactctatgaagcctcgatatctgacacgatccggatacgataccgagatgagaaatttttcaaaactcccgatacg 30552580  T
Q  390 atacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatga 461  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||| ||||||||||||    
T  30552579 atacgacctcgatacgttaataaaaaattaaaattaaaactaatagtataagtgcgcaatgtataaacatga 30552508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 492 - 704
Target Start/End: Complemental strand, 30552146 - 30551934
Alignment:
Q  492 taataaaaatgatcaaaacaagtgacaattacannnnnnncctgcacaaattagaatatagttaaacatcaatagtagtactatcataaaagaacatcaa 591  Q
    |||||||||||||||||||||| ||||||||||       ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||     
T  30552146 taataaaaatgatcaaaacaagcgacaattacatttttttcctgcacaagttagaatatagttaaacatcaatagtagtactatcataaaagaacaccat 30552047  T
Q  592 tggagagaagagaaacagagtagaacacatccgaggtgttgatggaggcaaccggtgatgctaagaatgagttaatcggtagtaatgatttgaagaggga 691  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||| |||||||||    
T  30552046 tggagagaagagaaacagagtagaacacatccgaggtgttgatggaggcaaccggtgatgttaagattgagtttatcggtagtaatgattagaagaggga 30551947  T
Q  692 atatttattgctc 704  Q
    |||||||||||||    
T  30551946 atatttattgctc 30551934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 384 - 524
Target Start/End: Complemental strand, 39580522 - 39580382
Alignment:
Q  384 gatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaac 483  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||| |||||||||||| | ||||||||    
T  39580522 gatacgatacggcctcgatacgttattaaaaaattaaatttaaaattaatagtataagtgcacaatgtataaacataactaaaaatgatgataaacaaac 39580423  T
Q  484 attcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  39580422 attcacattaatgaaaatgatcaaaacaagtgacaattaca 39580382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 365 - 524
Target Start/End: Original strand, 41530123 - 41530282
Alignment:
Q  365 gaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgacta 464  Q
    ||||||||||||||  |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||  ||| |||||||||| ||||    
T  41530123 gaaatttttcaaaattcctgatacgatacgacctagatacattattaaaaaattaaatttaaaattaatagtataagtgcacaatgtataaacataacta 41530222  T
Q  465 aaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
     ||||||||| || |||||||||| |||||| |||||||||||| |||||||||||||||    
T  41530223 caaatgataataatcaaacattcacattaatgaaaatgatcaaagcaagtgacaattaca 41530282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 337 - 524
Target Start/End: Complemental strand, 42864937 - 42864754
Alignment:
Q  337 acacgatacggatacgataccgacatgagaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagt 436  Q
    ||||||||| ||||||||||||   |  |||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42864937 acacgataccgatacgataccg--gtacgaaaattttcaaaattcctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaattaatagt 42864840  T
Q  437 ataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    ||  |||  ||| |||||||||| |||||||||||  | ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  42864839 at--gtgcacaatgtataaacataactaaaaatgaagataaacaaacattcacattaatgaaaatgatcaaaacaagtgacaattaca 42864754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 384 - 524
Target Start/End: Complemental strand, 959476 - 959336
Alignment:
Q  384 gatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaac 483  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||  ||| |||||||||| |||||||||||| | ||||||||    
T  959476 gatacgatacggcctcgatatgttattaaaaaattaaatttaaaattaatagtataagtgcacaatgtataaacataactaaaaatgatgataaacaaac 959377  T
Q  484 attcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  959376 attcacattaatgaaaatgatcaaaacaagtgacaattaca 959336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 384 - 522
Target Start/End: Complemental strand, 39674786 - 39674648
Alignment:
Q  384 gatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaac 483  Q
    |||||| |||| |||||||||||||||||||| |||||||||||| ||||||||||||||  ||| |||||||||| |||||||||||| | ||||||||    
T  39674786 gatacggtacggcctcgatacgttattaaaaatttaaatttaaaattaatagtataagtgcacaatgtataaacataactaaaaatgatgataaacaaac 39674687  T
Q  484 attcatattaataaaaatgatcaaaacaagtgacaatta 522  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  39674686 attcacattaatgaaaatgatcaaaacaagtgacaatta 39674648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 317 - 511
Target Start/End: Complemental strand, 21869534 - 21869343
Alignment:
Q  317 ctatgaaaccccgatatctgacacgatacggatacgataccgacatgagaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaa 416  Q
    |||||||  ||||||| |||||||||||| |||||| |   || | | |||| |||||||||  || ||||| ||||| |||| ||||||||||||||||    
T  21869534 ctatgaagtcccgatacctgacacgataccgatacggt---gatacgggaaaattttcaaaaatcccgataccatacggcctcaatacgttattaaaaaa 21869438  T
Q  417 ttaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaacattcatattaataaaaatgatcaaaaca 511  Q
    |||||||||||| ||||||||||||||  ||| |||||||||| |||||||||||||| ||||||||||| | |||||| |||||||||||||||    
T  21869437 ttaaatttaaaattaatagtataagtgcacaatgtataaacataactaaaaatgataataaacaaacatttacattaatgaaaatgatcaaaaca 21869343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 370 - 524
Target Start/End: Complemental strand, 25041980 - 25041826
Alignment:
Q  370 ttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaat 469  Q
    |||||||||  || |||| |||||  |||| ||||||||||||||||||||||| |||| ||||||||||||||  ||| |||||||||| |||||||||    
T  25041980 ttttcaaaattcccgatatgatacagcctcaatacgttattaaaaaattaaattgaaaattaatagtataagtgcacaatgtataaacataactaaaaat 25041881  T
Q  470 gataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    ||| | |||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  25041880 gatgagaaacaaacattcaccttaatgaaaatgatcaaaacaagtgacaattaca 25041826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 365 - 524
Target Start/End: Complemental strand, 29360389 - 29360229
Alignment:
Q  365 gaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaacta--atagtataagtgtgcaacgtataaacatgac 462  Q
    ||||||||||||||  || ||||||||||   || ||||||||||||||||||||||||||||| ||  ||| ||||| ||  ||| |||||||||| ||    
T  29360389 gaaatttttcaaaattcccgatacgatactgtcttgatacgttattaaaaaattaaatttaaaattaatatattataaatgcacaatgtataaacataac 29360290  T
Q  463 taaaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    | |||||||||| ||||||||||| | |||||| |||||||||||||  |||||||||||||    
T  29360289 t-aaaatgataataaacaaacattgacattaatgaaaatgatcaaaattagtgacaattaca 29360229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 390 - 472
Target Start/End: Complemental strand, 4534075 - 4533993
Alignment:
Q  390 atacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgat 472  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||| ||||||||||||    
T  4534075 atacggcctcgatacgttattaaaaaattaaatttaaaattaatagtataagtgcacaatgtataaacataactaaaaatgat 4533993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 399 - 507
Target Start/End: Original strand, 27391082 - 27391187
Alignment:
Q  399 cgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaacattcatattaataaa 498  Q
    ||||| |||||||||||||||||||||||| ||   |||||||||   || |||||||||| |||||||||||||| ||||||||||||| |||||| ||    
T  27391082 cgataagttattaaaaaattaaatttaaaatta---gtataagtgcagaatgtataaacataactaaaaatgataataaacaaacattcacattaatgaa 27391178  T
Q  499 aatgatcaa 507  Q
    |||||||||    
T  27391179 aatgatcaa 27391187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 418 - 481
Target Start/End: Original strand, 53330248 - 53330311
Alignment:
Q  418 taaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaa 481  Q
    ||||||||||| ||||||||||||||  ||| |||||||||| |||||||||||||| ||||||    
T  53330248 taaatttaaaattaatagtataagtgcacaatgtataaacataactaaaaatgataataaacaa 53330311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 418 - 481
Target Start/End: Original strand, 53333932 - 53333995
Alignment:
Q  418 taaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaa 481  Q
    ||||||||||| ||||||||||||||  ||| |||||||||| |||||||||||||| ||||||    
T  53333932 taaatttaaaattaatagtataagtgcacaatgtataaacataactaaaaatgataataaacaa 53333995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 418 - 481
Target Start/End: Original strand, 53337609 - 53337672
Alignment:
Q  418 taaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaa 481  Q
    ||||||||||| ||||||||||||||  ||| |||||||||| |||||||||||||| ||||||    
T  53337609 taaatttaaaattaatagtataagtgcacaatgtataaacataactaaaaatgataataaacaa 53337672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 450 - 494
Target Start/End: Original strand, 22976274 - 22976318
Alignment:
Q  450 gtataaacatgactaaaaatgataacaaacaaacattcatattaa 494  Q
    |||||||||| |||||||||||||| |||||||||||||||||||    
T  22976274 gtataaacataactaaaaatgataataaacaaacattcatattaa 22976318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 454 - 524
Target Start/End: Original strand, 51360636 - 51360706
Alignment:
Q  454 aaacatgactaaaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    |||||| || ||||||||||| |||||||||||||   |||| |||||||| ||  |||||||||||||||    
T  51360636 aaacataacaaaaaatgataataaacaaacattcacgctaatgaaaatgataaagtcaagtgacaattaca 51360706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 3e-56; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 315 - 524
Target Start/End: Original strand, 22204695 - 22204912
Alignment:
Q  315 atctatgaaaccccgatatctgacacgatacggatacgataccgaca---tga-----gaaatttttcaaaacacctgatacgatacgacctcgatacgt 406  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||| |   |||     ||||||||||||||   |||||||||||||  ||||||||||    
T  22204695 atctatgaagccccgatacctgacacgatatggatacgataccgatacggtgatacgtgaaatttttcaaaatttctgatacgatacggtctcgatacgt 22204794  T
Q  407 tattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaacattcatattaataaaaatgatca 506  Q
    |||||||||||||||||||||| ||||||||||||||  ||  |||||||||| |||||||||||||| ||||||||||||| |||||| ||||||||||    
T  22204795 tattaaaaaattaaatttaaaattaatagtataagtgcacactgtataaacataactaaaaatgataataaacaaacattcacattaatgaaaatgatca 22204894  T
Q  507 aaacaagtgacaattaca 524  Q
    ||||||||||||||||||    
T  22204895 aaacaagtgacaattaca 22204912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 315 - 524
Target Start/End: Complemental strand, 22230044 - 22229827
Alignment:
Q  315 atctatgaaaccccgatatctgacacgatacggatacgataccgaca---tga-----gaaatttttcaaaacacctgatacgatacgacctcgatacgt 406  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||| |   |||     ||||||||||||||   |||||||||||||  ||||||||||    
T  22230044 atctatgaagccccgatacctgacacgatatggatacgataccgatacggtgatacgtgaaatttttcaaaatttctgatacgatacggtctcgatacgt 22229945  T
Q  407 tattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaacattcatattaataaaaatgatca 506  Q
    |||||||||||||||||||||| ||||||||||||||  ||  |||||||||| |||||||||||||| ||||||||||||| |||||| ||||||||||    
T  22229944 tattaaaaaattaaatttaaaattaatagtataagtgcacactgtataaacataactaaaaatgataataaacaaacattcacattaatgaaaatgatca 22229845  T
Q  507 aaacaagtgacaattaca 524  Q
    ||||||||||||||||||    
T  22229844 aaacaagtgacaattaca 22229827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 315 - 522
Target Start/End: Original strand, 15042633 - 15042848
Alignment:
Q  315 atctatgaaaccccgatatctgacacgatacggatacgatac--------cgacatgagaaatttttcaaaacacctgatacgatacgacctcgatacgt 406  Q
    ||||||||| | | |||| |||||||||||||||||||||||        ||| | ||||||||||||||||| || |||||||||||||||||||||||    
T  15042633 atctatgaagctctgatacctgacacgatacggatacgatactgatacggcgatacgagaaatttttcaaaactcccgatacgatacgacctcgatacgt 15042732  T
Q  407 tattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaacattcatattaataaaaatgatca 506  Q
    |||| ||||||||||||||||||||||||||||||||  ||| ||||| |||| |||||||||||||| ||||||||||| |  | ||| ||||||||||    
T  15042733 tattcaaaaattaaatttaaaactaatagtataagtgcacaatgtatagacataactaaaaatgataataaacaaacatttacgtaaatgaaaatgatca 15042832  T
Q  507 aaacaagtgacaatta 522  Q
    |||||||||| |||||    
T  15042833 aaacaagtgataatta 15042848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 350 - 524
Target Start/End: Original strand, 26279360 - 26279534
Alignment:
Q  350 acgataccgacatgagaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaac 449  Q
    |||||||||| | | ||| ||||||||||   | ||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||  |||     
T  26279360 acgataccgatacgggaattttttcaaaatttccgatacgatagggcctcgatacgttattaaaaaattaaatttaaaattaatagtataagtgcacaat 26279459  T
Q  450 gtataaacatgactaaaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    |||||||||| |||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  26279460 gtataaacataactaaaaatgataataaacaaacattcacattaatgaaaatgatcaaaacaagtgacaattaca 26279534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 365 - 524
Target Start/End: Complemental strand, 25444255 - 25444096
Alignment:
Q  365 gaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgacta 464  Q
    |||| |||||||||  || ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||| ||||    
T  25444255 gaaaattttcaaaattcccgatacgatacggcttcgatacgttattaaaaaattaaatttaaaattaatagtataagtggacaatgtataaacataacta 25444156  T
Q  465 aaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    |||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  25444155 aaaatgatgataaacaaacattcacattaatgaaaatgatcaaaacaagtgacaattaca 25444096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 365 - 524
Target Start/End: Original strand, 19927685 - 19927843
Alignment:
Q  365 gaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgacta 464  Q
    |||| |||||||||| || |||||||||||  ||||||||||| |||||||||||||||||||| ||||||||||||||| ||| |||||||||| ||||    
T  19927685 gaaaattttcaaaactcccgatacgatacggactcgatacgtttttaaaaaattaaatttaaaattaatagtataagtgtacaatgtataaacataacta 19927784  T
Q  465 aaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    |||||||| | ||||||||||||| ||||||  |||||||||||||||||||||||||||    
T  19927785 aaaatgatgataaacaaacattcacattaat-gaaatgatcaaaacaagtgacaattaca 19927843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 365 - 524
Target Start/End: Original strand, 40819361 - 40819519
Alignment:
Q  365 gaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgacta 464  Q
    |||| |||||||||  || ||||| ||||  ||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||| ||||    
T  40819361 gaaaattttcaaaattcccgatacaatacagcctcgatacgttattaaaaaattaaatttaaaattaatagtataagtgcacaatgtataaacataacta 40819460  T
Q  465 aaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    |||||||| | ||||||||||||| ||||||  |||||||||||||||||||||||||||    
T  40819461 aaaatgatgataaacaaacattcacattaat-gaaatgatcaaaacaagtgacaattaca 40819519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 361 - 506
Target Start/End: Complemental strand, 22293495 - 22293350
Alignment:
Q  361 atgagaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatg 460  Q
    ||||||||||||||||||   | ||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||     
T  22293495 atgagaaatttttcaaaatttccgatacaatacgaactcgatacgttattaaaaaattaaatttaaaattaatagtataagtgcacaatgtataaacata 22293396  T
Q  461 actaaaaatgataacaaacaaacattcatattaataaaaatgatca 506  Q
    |||||||||||||| ||| |||||||||  ||||| ||||||||||    
T  22293395 actaaaaatgataataaataaacattcaagttaatgaaaatgatca 22293350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 388 - 524
Target Start/End: Complemental strand, 45281439 - 45281303
Alignment:
Q  388 cgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaacattc 487  Q
    ||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||||   |  |||||||||| | |||||||||||| |||| |||||||    
T  45281439 cgatacggcctcaatatgttattaaaaaattaaatttaaaattaatagtataagtgcatagtgtataaacataattaaaaatgataataaactaacattc 45281340  T
Q  488 atattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    | |||||| ||||||||||||||||||||||||||||    
T  45281339 acattaatgaaaatgatcaaaacaagtgacaattaca 45281303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 413 - 524
Target Start/End: Complemental strand, 30948159 - 30948048
Alignment:
Q  413 aaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaa 512  Q
    |||||||||||||||| ||||||||||||||  ||| |||||||||| |||||||||||| | ||||||||||||| |||||| ||||||||||||||||    
T  30948159 aaaattaaatttaaaattaatagtataagtgcacaatgtataaacataactaaaaatgatgataaacaaacattcacattaatgaaaatgatcaaaacaa 30948060  T
Q  513 gtgacaattaca 524  Q
    ||||||||||||    
T  30948059 gtgacaattaca 30948048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 421
Target Start/End: Complemental strand, 30948670 - 30948558
Alignment:
Q  317 ctatgaaaccccgatatctgacacgatacggatacgatac--------cgacatgagaaatttttcaaaacacctgatacgatacgacctcgatacgtta 408  Q
    ||||||| |||||||| |||||||||||| ||||||||||        ||| | | |||| |||||||||  || ||||||||||| | || ||||||||    
T  30948670 ctatgaagccccgatacctgacacgataccgatacgataccgatacagcgatacgggaaaattttcaaaattcccgatacgatacggcatcaatacgtta 30948571  T
Q  409 ttaaaaaattaaa 421  Q
    |||||||||||||    
T  30948570 ttaaaaaattaaa 30948558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 108; Significance: 7e-54; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 365 - 524
Target Start/End: Original strand, 37479 - 37638
Alignment:
Q  365 gaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgacta 464  Q
    |||| |||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||| ||||    
T  37479 gaaaattttcaaaattcctgatacgatacggcctcgatacgttattaaaaaattaaatttaaaattaatagtataagtgcacaatgtataaacataacta 37578  T
Q  465 aaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    |||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  37579 aaaatgatgataaacaaacattcacattaatgaaaatgatcaaaacaagtgacaattaca 37638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 3e-53; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 350 - 524
Target Start/End: Original strand, 13854108 - 13854282
Alignment:
Q  350 acgataccgacatgagaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaac 449  Q
    |||||||||| ||| |||| |||||||||  || ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  |||     
T  13854108 acgataccgatatgggaaaattttcaaaattcccgatacgatacggcctcgatacgttattaaaaaattaaatttaaaattaatagtataagtgcacaat 13854207  T
Q  450 gtataaacatgactaaaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    ||||||| || |||||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  13854208 gtataaagataactaaaaatgatgataaacaaacattcacattaatgaaaatgatcaaaacaagtgacaattaca 13854282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 384 - 524
Target Start/End: Complemental strand, 36606770 - 36606630
Alignment:
Q  384 gatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaac 483  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||| |||||||||||| | ||||||||    
T  36606770 gatacgatacggcctcgatacgttattaaaaaattaaatttaaaattaatagtataagtgcccaatgtataaacataactaaaaatgatgataaacaaac 36606671  T
Q  484 attcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  36606670 attcacattaatgaaaatgatcaaaacaagtgacaattaca 36606630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 365 - 524
Target Start/End: Complemental strand, 8871892 - 8871733
Alignment:
Q  365 gaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgacta 464  Q
    |||| |||||||||  || ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||| ||||    
T  8871892 gaaaattttcaaaattcccgatacgatacggcctcgatacgttattaaaaaattaaatttaaaattaatagtataagtgcacaatgtataaacataacta 8871793  T
Q  465 aaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    |||||||| | ||||||||||||| |||||| ||||||||||||||||||||||| ||||    
T  8871792 aaaatgatgataaacaaacattcacattaatgaaaatgatcaaaacaagtgacaaataca 8871733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 350 - 524
Target Start/End: Complemental strand, 6666359 - 6666185
Alignment:
Q  350 acgataccgacatgagaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaac 449  Q
    ||||||| || ||| ||||||||| ||||  || ||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||   |      
T  6666359 acgatacggatatgggaaattttttaaaattcccgatacgatacggcctcgatacgttattaaaaaattaaatttaaacttaatagtataagtgcagagt 6666260  T
Q  450 gtataaacatgactaaaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    |||||||||| |||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  6666259 gtataaacataactaaaaatgataataaacaaacattcacattaatgaaaatgatcaaaacaagtgacaattaca 6666185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 399 - 524
Target Start/End: Complemental strand, 32659535 - 32659410
Alignment:
Q  399 cgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaacattcatattaataaa 498  Q
    |||||| ||||||||||||||||||||||| ||| ||||||| |||| |  |||||||||| |||||||||||||  |||||||| |||| |||||||||    
T  32659535 cgatacattattaaaaaattaaatttaaaattaacagtataaatgtgtagtgtataaacataactaaaaatgatattaaacaaactttcacattaataaa 32659436  T
Q  499 aatgatcaaaacaagtgacaattaca 524  Q
    ||| ||||||| ||||||||||||||    
T  32659435 aataatcaaaagaagtgacaattaca 32659410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 325 - 427
Target Start/End: Complemental strand, 29795677 - 29795575
Alignment:
Q  325 ccccgatatctgacacgatacggatacgataccgacatgagaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaattt 424  Q
    ||||||||  |||||| |||||||||||||||||| | | ||||||||||||||  ||||| | |||||| | |||||||||||||||||||||||||||    
T  29795677 ccccgatacttgacacaatacggatacgataccgatacgggaaatttttcaaaattcctgacatgatacggcgtcgatacgttattaaaaaattaaattt 29795578  T
Q  425 aaa 427  Q
    |||    
T  29795577 aaa 29795575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 2e-51; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 365 - 524
Target Start/End: Complemental strand, 17068823 - 17068664
Alignment:
Q  365 gaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgacta 464  Q
    |||| |||||||||  || ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||| ||||    
T  17068823 gaaaattttcaaaattcccgatacgatacggcctcgatacgttattaaaaaattaaatttaaaattaatagtataagtgcacaatgtataaacataacta 17068724  T
Q  465 aaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    |||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  17068723 aaaatgatgataaacaaacattcacattaatgaaaatgatcaaaacaagtgacaattaca 17068664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 365 - 524
Target Start/End: Original strand, 17579450 - 17579609
Alignment:
Q  365 gaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgacta 464  Q
    |||| |||||||||  || ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||| ||||    
T  17579450 gaaaattttcaaaattcccgatacgatacggcctcgatacgttattaaaaaattaaatttaaaattaatagtataagtgcacaatgtataaacataacta 17579549  T
Q  465 aaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    |||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  17579550 aaaatgatgataaacaaacattcacattaatgaaaatgatcaaaacaagtgacaattaca 17579609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 365 - 524
Target Start/End: Complemental strand, 20289987 - 20289828
Alignment:
Q  365 gaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgacta 464  Q
    |||| |||||||||  || ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||| ||||    
T  20289987 gaaaattttcaaaattcccgatacgatacggcctcgatacgttattaaaaaattaaatttaaaattaatagtataagtgcacaatgtataaacataacta 20289888  T
Q  465 aaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    |||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  20289887 aaaatgatgataaacaaacattcacattaatgaaaatgatcaaaacaagtgacaattaca 20289828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 365 - 524
Target Start/End: Complemental strand, 21076617 - 21076458
Alignment:
Q  365 gaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgacta 464  Q
    |||| |||||||||  || ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||| ||||    
T  21076617 gaaaattttcaaaattcccgatacgatacggcctcgatacgttattaaaaaattaaatttaaaattaatagtataagtgcacaatgtataaacataacta 21076518  T
Q  465 aaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    |||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  21076517 aaaatgatgataaacaaacattcacattaatgaaaatgatcaaaacaagtgacaattaca 21076458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 385 - 524
Target Start/End: Original strand, 10861257 - 10861396
Alignment:
Q  385 atacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaaca 484  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||| |||||||||||| | |||||||||    
T  10861257 atacgatacggcctcgatacgttattaaaaaattaaatttaaaattaatagtataagtgcacaatgtataaacataactaaaaatgatgataaacaaaca 10861356  T
Q  485 ttcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  10861357 ttcacattaatgaaaatgatcaaaacaagtgacaattaca 10861396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 371 - 524
Target Start/End: Original strand, 17630596 - 17630749
Alignment:
Q  371 tttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatg 470  Q
    ||||||||  || ||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||| ||||||||||    
T  17630596 tttcaaaattcccgatacgatacggcctcaatacgttattaaaaaattaaatttaaaattaatagtataagtgcacaatgtataaacataactaaaaatg 17630695  T
Q  471 ataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    || | ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  17630696 atgataaacaaacattcacattaatgaaaatgatcaaaacaagtgacaattaca 17630749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 365 - 524
Target Start/End: Complemental strand, 29055213 - 29055054
Alignment:
Q  365 gaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgacta 464  Q
    |||| |||||||||  || ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||   || |||||||||| ||||    
T  29055213 gaaaattttcaaaattcccgatacgatacggccttgatacgttattaaaaaattaaatttaaaattaatagtataagtgcataatgtataaacataacta 29055114  T
Q  465 aaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    |||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  29055113 aaaatgatgataaacaaacattcacattaatgaaaatgatcaaaacaagtgacaattaca 29055054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 388 - 524
Target Start/End: Original strand, 34964199 - 34964335
Alignment:
Q  388 cgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaacattc 487  Q
    ||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||  ||| |||||||||| |||||||||||| | ||||||||||||    
T  34964199 cgatacggcctcgatacgttattaaaatattaaatttaaaattaatagtataagtgcacaatgtataaacataactaaaaatgatgataaacaaacattc 34964298  T
Q  488 atattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    | |||||| ||||||||||||||||||||||||||||    
T  34964299 acattaatgaaaatgatcaaaacaagtgacaattaca 34964335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 399 - 568
Target Start/End: Original strand, 44718037 - 44718206
Alignment:
Q  399 cgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaacattcatattaataaa 498  Q
    |||||||||||||||| |||||||||||||||| |||||||||||| ||| |||||||||| |||||||||||||| ||||||||||| | || ||||||    
T  44718037 cgatacgttattaaaagattaaatttaaaactattagtataagtgtacaatgtataaacataactaaaaatgataataaacaaacatttacataaataaa 44718136  T
Q  499 aatgatcaaaacaagtgacaattacannnnnnncctgcacaaattagaatatagttaaacatcaatagta 568  Q
    |||||||| |||||||||||||||||        |||||||||||| ||||||| |||| |||| |||||    
T  44718137 aatgatcagaacaagtgacaattacatattttttctgcacaaattaaaatatagctaaatatcattagta 44718206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 384 - 524
Target Start/End: Original strand, 3046221 - 3046358
Alignment:
Q  384 gatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaac 483  Q
    ||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||   || |||||||||||||| ||| ||||    
T  3046221 gatacgatatggcctcgatacgttattaaaaaattaaatttaaaattaatagtataagtgcacaatgtata---ataactaaaaatgataataaaaaaac 3046317  T
Q  484 attcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
     |||| |||||| |||||||||||||||||||| |||||||    
T  3046318 gttcacattaatgaaaatgatcaaaacaagtgataattaca 3046358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 4e-49; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 363 - 522
Target Start/End: Complemental strand, 32761179 - 32761020
Alignment:
Q  363 gagaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgac 462  Q
    ||||||||||||||||| ||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||  ||| ||||| |     
T  32761179 gagaaatttttcaaaactcctaatacgatacggcctcgatacgttcttaaaaaattaaatttaaaactaatagtataagtgcacaatatatgaacataat 32761080  T
Q  463 taaaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaatta 522  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||    
T  32761079 taaaaatgataataaacaaacattcacattaatgaaaatgatcaaaacaagcgacaatta 32761020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 365 - 524
Target Start/End: Complemental strand, 26261829 - 26261669
Alignment:
Q  365 gaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaattt-aaaactaatagtataagtgtgcaacgtataaacatgact 463  Q
    ||||||||||||||  || ||||||||| | ||||||||||||||||||||||||||||| |||| ||| ||||||||||  ||| |||||||||| |||    
T  26261829 gaaatttttcaaaattcccgatacgatatggcctcgatacgttattaaaaaattaaattttaaaattaacagtataagtgcacaatgtataaacataact 26261730  T
Q  464 aaaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
     |||||||||| ||||||||||||| || ||| ||||||||||||||||||||||||||||    
T  26261729 taaaatgataataaacaaacattcacataaatgaaaatgatcaaaacaagtgacaattaca 26261669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 419 - 524
Target Start/End: Complemental strand, 54260709 - 54260604
Alignment:
Q  419 aaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgaca 518  Q
    |||||||||| ||||||||||||||  ||| |||||||||| |||||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||    
T  54260709 aaatttaaaattaatagtataagtgcacaatgtataaacataactaaaaatgatgataaacaaacattcacattaatgaaaatgatcaaaacaagtgaca 54260610  T
Q  519 attaca 524  Q
    ||||||    
T  54260609 attaca 54260604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 399 - 474
Target Start/End: Complemental strand, 51161689 - 51161613
Alignment:
Q  399 cgatacgttattaa-aaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataa 474  Q
    ||||| |||||||| |||||||||||||||||||||| ||||||||  |||  ||||||||| ||||||||||||||    
T  51161689 cgatatgttattaagaaaattaaatttaaaactaataatataagtgcacaatatataaacataactaaaaatgataa 51161613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 594 - 652
Target Start/End: Complemental strand, 26261405 - 26261347
Alignment:
Q  594 gagagaagagaaacagagtagaacacatccgaggtgttgatggaggcaaccggtgatgc 652  Q
    ||||||||||||| |||| |||||||| | ||||||||||||||||||| | |||||||    
T  26261405 gagagaagagaaagagagcagaacacaccggaggtgttgatggaggcaatcagtgatgc 26261347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 356
Target Start/End: Complemental strand, 32761240 - 32761199
Alignment:
Q  315 atctatgaaaccccgatatctgacacgatacggatacgatac 356  Q
    ||||||||| |||||||| || ||||||||||||||||||||    
T  32761240 atctatgaagccccgatacctaacacgatacggatacgatac 32761199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 4e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 385 - 524
Target Start/End: Original strand, 14313835 - 14313974
Alignment:
Q  385 atacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaaca 484  Q
    |||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||  ||| |||||||||| |||||||||||||| |||||||||    
T  14313835 atacgatacggcctcgatacgttattaaaaaattaaatttagaattaatagtataagtgcacaatgtataaacataactaaaaatgataataaacaaaca 14313934  T
Q  485 ttcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  14313935 ttcacattaatgaaaatgatcaaaacaagtgacaattaca 14313974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 350 - 524
Target Start/End: Complemental strand, 14811939 - 14811765
Alignment:
Q  350 acgataccgacatgagaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaac 449  Q
    |||||||||| | | |||| |||||||||   | ||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||  |||     
T  14811939 acgataccgatacgggaaaattttcaaaatttccgatacgatacgacctcgatacgttattaaaaaaataaatttaaagttaatagtataagtgcacaat 14811840  T
Q  450 gtataaacatgactaaaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    |||||||||| |||||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  14811839 gtataaacataactaaaaatgatgataaacaaacattcacattaatgaaaatgatcaaaacaagtgacaattaca 14811765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 384 - 522
Target Start/End: Original strand, 13043277 - 13043410
Alignment:
Q  384 gatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaac 483  Q
    |||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||  ||| ||||||| || | |||||||||||| |||||||     
T  13043277 gatatgatacggcctcgatacgttattaaaaaattaaatttaaaattaatagtataa-tgcacaatgtataaatataattaaaaatgataataaacaaa- 13043374  T
Q  484 attcatattaataaaaatgatcaaaacaagtgacaatta 522  Q
       || |||||| ||||||||||||||||||||||||||    
T  13043375 ---cacattaatgaaaatgatcaaaacaagtgacaatta 13043410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 3e-47; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 384 - 524
Target Start/End: Complemental strand, 21112725 - 21112585
Alignment:
Q  384 gatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaac 483  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||   ||| |||||||||| |||||||||||| | ||||||||    
T  21112725 gatacgatacggcctcgatacgttattaaaaaattaaatttaaaattaatagtataagtacacaatgtataaacataactaaaaatgatgataaacaaac 21112626  T
Q  484 attcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  21112625 attcacattaatgaaaatgatcaaaacaagtgacaattaca 21112585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 384 - 568
Target Start/End: Original strand, 1413847 - 1414032
Alignment:
Q  384 gatacgatacgacctcgatacgttattaaaaaattaaa--tttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaa 481  Q
    ||||||||||| |||| |||||||||||||||||||||  ||||||| ||||| ||||||||  ||| |||||||||| |||||||||||||| ||||||    
T  1413847 gatacgatacggcctcaatacgttattaaaaaattaaaattttaaaattaataatataagtgcacaatgtataaacataactaaaaatgataataaacaa 1413946  T
Q  482 acattcatattaataaaaatgatcaaaacaagtgacaattacannnnnnncctgcacaaattagaatatagttaaacatcaatagta 568  Q
    ||||||| | |||| |||||||||||||||||||||| |||||       ||  ||||||||||||||||| ||||||||| |||||    
T  1413947 acattcacactaatgaaaatgatcaaaacaagtgacatttacatatttttcc-acacaaattagaatatagctaaacatcattagta 1414032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 350 - 524
Target Start/End: Complemental strand, 8862695 - 8862520
Alignment:
Q  350 acgataccgacatgagaaat--ttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgca 447  Q
    |||||||||| | |||||||  |||||||||  || ||||| ||||  |||||||||||||||||||| ||||||||||||  |||||||||||||  ||    
T  8862695 acgataccgatacgagaaatatttttcaaaattcccgatacaatactgcctcgatacgttattaaaaa-ttaaatttaaaatgaatagtataagtgcaca 8862597  T
Q  448 acgtataaacatgactaaaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    | ||||||| || |||||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  8862596 atgtataaatataactaaaaatgatgataaacaaacattcacattaatgaaaatgatcaaaacaagtgacaattaca 8862520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 370 - 524
Target Start/End: Original strand, 9149640 - 9149794
Alignment:
Q  370 ttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaat 469  Q
    |||||||||  || ||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| |||  ||| ||||| | || |  || |||    
T  9149640 ttttcaaaattcccgatacgatacggcctcgatacattattaaaaaattaaatttaaaactaacagtatacgtgcacaatgtatacatataatgaataat 9149739  T
Q  470 gataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    ||||| |||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  9149740 gataataaacaaacattcaggttaatgaaaatgatcaaaacaagtgacaattaca 9149794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 385 - 520
Target Start/End: Complemental strand, 34752523 - 34752388
Alignment:
Q  385 atacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaaca 484  Q
    ||||||||||  || ||||||||||||||| |||| |||||||| |||||||||| |||  ||  || ||| ||| |||||||||||||| ||| |||||    
T  34752523 atacgatacggtcttgatacgttattaaaagattatatttaaaattaatagtatatgtgcccagtgtgtaatcataactaaaaatgataataaataaaca 34752424  T
Q  485 ttcatattaataaaaatgatcaaaacaagtgacaat 520  Q
    || | |||||||||||||||||||| ||| ||||||    
T  34752423 ttaacattaataaaaatgatcaaaagaagagacaat 34752388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 389 - 439
Target Start/End: Complemental strand, 9177169 - 9177118
Alignment:
Q  389 gatacgacctcgatacgttattaaaaaa-ttaaatttaaaactaatagtata 439  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||||||||    
T  9177169 gatacggcctcgatacattattaaaaaaattaaatttaaaactaatagtata 9177118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 33585226 - 33585167
Alignment:
Q  363 gagaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaat 422  Q
    |||||||||||||||||  | ||||||||||||| | || ||||||||||||||||||||    
T  33585226 gagaaatttttcaaaacttccgatacgatacgacattgaaacgttattaaaaaattaaat 33585167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 7e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 317 - 522
Target Start/End: Original strand, 22150057 - 22150270
Alignment:
Q  317 ctatgaaaccccgatatctgacacgatacggatacgataccgacatg--------agaaatttttcaaaacacctgatacgatacgacctcgatacgtta 408  Q
    |||||||  ||||||| ||||||||||||||||||||||||||   |        |||||||||||||||| || | |||||||||  |||||||| |||    
T  22150057 ctatgaagtcccgatacctgacacgatacggatacgataccgatgcggcgatacaagaaatttttcaaaactcccgttacgatacggactcgatacatta 22150156  T
Q  409 ttaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaacattcatattaataaaaatgatcaaa 508  Q
    |||||||||||||||||||| ||||||||||| ||  |||  ||||||||| |||||||||||||| ||||||||||||| |||||| ||||||| ||||    
T  22150157 ttaaaaaattaaatttaaaaataatagtataaatgcacaatatataaacataactaaaaatgataataaacaaacattcacattaatgaaaatgaccaaa 22150256  T
Q  509 acaagtgacaatta 522  Q
    ||||||||||||||    
T  22150257 acaagtgacaatta 22150270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 370 - 524
Target Start/End: Complemental strand, 3366103 - 3365949
Alignment:
Q  370 ttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgactaaaaat 469  Q
    |||||||||  || ||||||||||| |||| ||||||||||||||| |||||||||||| ||||||||||||||  ||  ||||||||||  ||||||||    
T  3366103 ttttcaaaatccccgatacgatacggcctcaatacgttattaaaaagttaaatttaaaattaatagtataagtgcacagtgtataaacatagctaaaaat 3366004  T
Q  470 gataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaattaca 524  Q
    ||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||    
T  3366003 gataataaataaacattcacattaatgaaaatgatcaaaacaagtgacaattaca 3365949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 365 - 469
Target Start/End: Original strand, 1608473 - 1608577
Alignment:
Q  365 gaaatttttcaaaacacctgatacgatacgacctcgatacgttattaaaaaattaaatttaaaactaatagtataagtgtgcaacgtataaacatgacta 464  Q
    |||| |||||||||  || ||||| || || ||||||||||||||||||||||||||||||||| ||||||||||||||   || |||||||||| ||||    
T  1608473 gaaaattttcaaaattcccgatacaatgcggcctcgatacgttattaaaaaattaaatttaaaattaatagtataagtgcaaaatgtataaacataacta 1608572  T
Q  465 aaaat 469  Q
    |||||    
T  1608573 aaaat 1608577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 430 - 521
Target Start/End: Original strand, 23205680 - 23205771
Alignment:
Q  430 taatagtataagtgtgcaacgtataaacatgactaaaaatgataacaaacaaacattcatattaataaaaatgatcaaaacaagtgacaatt 521  Q
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T  23205680 taatagtataagtgtccgatgtgtaaacataattaaaaatgataataaactaacattcacattaatgaaaatgatcaaaacaagtgacaatt 23205771  T

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