View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10034_high_12 (Length: 229)
Name: NF10034_high_12
Description: NF10034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10034_high_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 13909822 - 13909601
Alignment:
| Q |
8 |
gtgtgacttgaatatatctccatacctatgttcattaaattcaaaatcatcaaatttgagtatgtgtgccacaatataaaaggttttgaattcttcgtaa |
107 |
Q |
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| T |
13909822 |
gtgtgtcttgaatatatctccatacctatgttcattaaattcaaaatcatcaaatttgagtatgtgtgccacaatataaaaggttttgaattcttcgtaa |
13909723 |
T |
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| Q |
108 |
tcactactgcaatttcgaccacatcgaccatattttactacaatttaaatatttgtagtataactgcaaccgcaacttagaaccatgtaaacaacaattt |
207 |
Q |
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| T |
13909722 |
tcactactgcaatttcgaccacatcgaccatattttactacaatttaaatatttgtagtataactgcaaccgcaacttagaaccatgtaaacaacaattt |
13909623 |
T |
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| Q |
208 |
tgttgtgttcaatttttaggtc |
229 |
Q |
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| T |
13909622 |
tgttgtgttcaatttttaggtc |
13909601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 13890241 - 13890277
Alignment:
| Q |
159 |
tttgtagtataactgcaaccgcaacttagaaccatgt |
195 |
Q |
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| T |
13890241 |
tttgtagtgtaactgcaaccgcaatttagaaccatgt |
13890277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 14030366 - 14030402
Alignment:
| Q |
159 |
tttgtagtataactgcaaccgcaacttagaaccatgt |
195 |
Q |
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| T |
14030366 |
tttgtagtgtaactgcaaccgcaatttagaaccatgt |
14030402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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