View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10034_high_2 (Length: 695)
Name: NF10034_high_2
Description: NF10034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10034_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 539; Significance: 0; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 55 - 690
Target Start/End: Complemental strand, 35377005 - 35376370
Alignment:
| Q |
55 |
aaattaaggaatggagtatttatcaaatacttttgcatattgattaaaagaaaatcattttttaatagaatgagaaagctattaaaattgtgtgagagat |
154 |
Q |
| |
|
|||||||| ||||||| || |||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35377005 |
aaattaagcaatggagaatatatcaaatacaggtgcataatgattaaaagaaaatcattttttaatataatgagaaagctattaaaattgtgtgagagat |
35376906 |
T |
|
| Q |
155 |
aaagataaaggaaggtcacaaacacatgaaagacattttaaagtatatatagcnnnnnnntaagatcatagaaagaactttaccaggaggaatatatcct |
254 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35376905 |
aaagataaaggaaggtcacaagcacatgaaagacattttaaaggatgtatagcaacaaaataagatcatagaaagaactttaccaggaggaatatatcct |
35376806 |
T |
|
| Q |
255 |
atagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaacctagctacgccaaagtctcctaagtgggtca |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
35376805 |
atagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaacctagctaagccaaagtctcctaagtgggcca |
35376706 |
T |
|
| Q |
355 |
caccgtcatcatcaagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtc |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35376705 |
caccgtcatcatcaagaagaacattgcttggcttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtc |
35376606 |
T |
|
| Q |
455 |
gagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaacaggttttctagattcccactaggcatg |
554 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35376605 |
gagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaacaggttttccagattcccactaggcatg |
35376506 |
T |
|
| Q |
555 |
aactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaag |
654 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35376505 |
aactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaag |
35376406 |
T |
|
| Q |
655 |
cattgcattccaccatgaaactctctgcttctccac |
690 |
Q |
| |
|
||||||||||| | |||||||||| |||| |||||| |
|
|
| T |
35376405 |
cattgcattccgcaatgaaactctttgctgctccac |
35376370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 168 - 690
Target Start/End: Complemental strand, 35424151 - 35423629
Alignment:
| Q |
168 |
ggtcacaaacacatgaaagacattttaaagtatatatagcnnnnnnntaagatcatagaaagaactttaccaggaggaatatatcctatagttcctttaa |
267 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35424151 |
ggtcgcaagcacatgaaagacattttaaaggatgtatagcaacaaaataagatcatagaaagaactttaccaggaggaatatatcctatagttcctttaa |
35424052 |
T |
|
| Q |
268 |
ttgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaacctagctacgccaaagtctcctaagtgggtcacaccgtcatcatc |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35424051 |
ttgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaacctagctacgccaaagtctcctaagtgggtcacaccgtcatcatc |
35423952 |
T |
|
| Q |
368 |
aagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtct |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35423951 |
aagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtct |
35423852 |
T |
|
| Q |
468 |
aacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaacaggttttctagattcccactaggcatgaactcaaaaacaa |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35423851 |
aacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaacaggttttctagattcccactaggcatgaactcaaaaacaa |
35423752 |
T |
|
| Q |
568 |
tggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattccac |
667 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35423751 |
tggccttaaaatcttcaccattataatcaacacttgaacagcaagttaggattttcacaagattacggtgcttcatctttcctaaagcattgcattccac |
35423652 |
T |
|
| Q |
668 |
catgaaactctctgcttctccac |
690 |
Q |
| |
|
||||||||||| |||| |||||| |
|
|
| T |
35423651 |
catgaaactctttgctgctccac |
35423629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 226 - 676
Target Start/End: Complemental strand, 35755236 - 35754792
Alignment:
| Q |
226 |
aaagaactttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaacct |
325 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||| |||||| ||||||||| ||||||||||| ||||||||||||||| | || ||| |
|
|
| T |
35755236 |
aaagaactttaccaggaggaacatatcctatagttcccttaattgtagaggaattaacttgatctttacttgaatgttctgtagctccatgaatgagcct |
35755137 |
T |
|
| Q |
326 |
agctacgccaaagtctcctaagtgggtcacaccgtcatcatcaagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattg |
425 |
Q |
| |
|
||||| |||||||||||| ||||||| ||| |||||||||||||||||||||||||| |||| |||||| |||||||| ||||| |||||||||||| |
|
|
| T |
35755136 |
agctaggccaaagtctcccaagtgggctacaatttcatcatcaagaagaacattgcttggcttaatatcacagtgaactacgacttgttctgtatcattg |
35755037 |
T |
|
| Q |
426 |
tgaagataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgca |
525 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||| | ||||| ||| |||| ||| | |||| |
|
|
| T |
35755036 |
tgaagataatccaatgcatgagctacatcaagagcaatgtctaacctttgtgtgaggttgagattaaaatttcctgac------ccttcattatcgtgca |
35754943 |
T |
|
| Q |
526 |
acaggttttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattttgac |
625 |
Q |
| |
|
||| ||||| ||| ||||| | | |||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
35754942 |
acaacttttcaagactcccatttgacatgaactcaaaaacaatagctttgaaatcttcaccattataatcaacacttgaacaacaagttaaaatcttgac |
35754843 |
T |
|
| Q |
626 |
aagattacggtgcttcatctttcctaaagcattgcattccaccatgaaact |
676 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||||||| | |||||||| |
|
|
| T |
35754842 |
aagattccggtgcttcatctttcccaatgcattgcattccgctatgaaact |
35754792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 227 - 678
Target Start/End: Complemental strand, 35411094 - 35410649
Alignment:
| Q |
227 |
aagaactttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaaccta |
326 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| ||||| | |||| | | || |||| |
|
|
| T |
35411094 |
aagagctttaccaggaggaatatatcctatagttcctttaattgtagaaaaaataacttgatctttacttgaatgctctgtggttccaagaatgagccta |
35410995 |
T |
|
| Q |
327 |
gctacgccaaagtctcctaagtgggtcacaccgtcatcatcaagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgt |
426 |
Q |
| |
|
|| | |||||||||||| ||||||| ||| |||||| ||||||||||| ||||| || |||| |||||| ||||||||| |||||||||| ||||||| |
|
|
| T |
35410994 |
gccaagccaaagtctcccaagtgggctacaaagtcatcgtcaagaagaacgttgctcggcttaagatcacagtgaactacagcttgctctgtctcattgt |
35410895 |
T |
|
| Q |
427 |
gaagataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaa |
526 |
Q |
| |
|
|||||||||| | |||||||||||| || ||||||||||||||||||||||||| |||||||| ||||| |||| |||||||| ||||||| |
|
|
| T |
35410894 |
gaagataatcaagtgcatgagctacatcaagagcaatgtctaacctttgtgtgaggttgagattatgattttcagac------ccttcgttatcatgcaa |
35410801 |
T |
|
| Q |
527 |
caggttttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattttgaca |
626 |
Q |
| |
|
| ||||||||||||||| ||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35410800 |
aaacttttctagattcccattaggcattaactcaaaaacaatagccttgaactcttcaccattataatcaacacttgaacaacacgttaggattttgaca |
35410701 |
T |
|
| Q |
627 |
agattacggtgcttcatctttcctaaagcattgcattccaccatgaaactct |
678 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
35410700 |
agattacggtgcctcatctttcttaaagcattgcattccgccatgaaactct |
35410649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 227 - 690
Target Start/End: Complemental strand, 35386433 - 35385976
Alignment:
| Q |
227 |
aagaactttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaaccta |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||| | |||| | | || |||| |
|
|
| T |
35386433 |
aagaactttaccaggaggaatatatcctatagttcctttaatagtagaggaaataacttgatctttacttgaatgctctgtggttccaagaatgatccta |
35386334 |
T |
|
| Q |
327 |
gctacgccaaagtctcctaagtgggtcacaccgtcatcatcaagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgt |
426 |
Q |
| |
|
|| | |||||||||||| ||||||| ||| |||||| ||||||||||| |||||||| |||| |||||| |||||||| |||||||||||||||||| |
|
|
| T |
35386333 |
gccaagccaaagtctcccaagtgggctacaaagtcatcgtcaagaagaacgttgcttggcttaagatcacagtgaactacggcttgctctgtatcattgt |
35386234 |
T |
|
| Q |
427 |
gaagataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaa |
526 |
Q |
| |
|
|||||||||| | |||||||||||| || ||||||||||||||||||| ||||| |||||||| ||||| |||| |||| ||| ||||| |
|
|
| T |
35386233 |
gaagataatcaagtgcatgagctacatcaagagcaatgtctaacctttatgtgaggttgagattatgattttcagac------ccttcattattgtgcaa |
35386140 |
T |
|
| Q |
527 |
caggttttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattttgaca |
626 |
Q |
| |
|
| ||||| ||| || || | | |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
35386139 |
aaacttttcaagactctcatttgacatgaactcaaaaacaatagccttgaaatcttcacccttataatcaacacttgaacaacaggttaggaccttgaca |
35386040 |
T |
|
| Q |
627 |
agattacggtgcttcatctttcctaaagcattgcattccaccatgaaactctctgcttctccac |
690 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
35386039 |
agattctggtgcttcatctttcccagagcattgcattctgccatgaaactctttgctgctccac |
35385976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 35426006 - 35425849
Alignment:
| Q |
18 |
catactctattcaaacaacaacaattctttagaatagaaattaaggaatggagtatttatcaaatacttttgcatattgattaaaagaaaatcatttttt |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35426006 |
catactctattaaaacaacaacaattctttagaatagaaattaaggaatggagtatttatcaaatacttatgcatattgattaaaagaaaatcatttttt |
35425907 |
T |
|
| Q |
118 |
aatagaatgagaaagctattaaaattgtgtgagagataaagataaaggaaggtcacaa |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35425906 |
aatagaatgagaaagctattaaaattgtgtgagagataaagataaaggaaggtcacaa |
35425849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 222 - 651
Target Start/End: Complemental strand, 35367286 - 35366863
Alignment:
| Q |
222 |
atagaaagaactttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggagga |
321 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| ||||||||| ||||||||||| ||| | | |||| | | || |
|
|
| T |
35367286 |
atagaaagaactttaccaggaggaacatatcctatagttcccttaattgtggaagaattaacttgatctttacttgaatggtctctggttccaagaatga |
35367187 |
T |
|
| Q |
322 |
acctagctacgccaaagtctcctaagtgggtcacaccgtcatcatcaagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatc |
421 |
Q |
| |
|
|||||||| |||||||||||| ||||||| ||| |||||| || |||||||| ||||| || |||| |||||| ||||||| || ||||||| | |
|
|
| T |
35367186 |
gcctagctaagccaaagtctcccaagtgggctacagtgtcatcgtccagaagaacgttgctcggcttaatatcacagtgaactatggatttctctgtacc |
35367087 |
T |
|
| Q |
422 |
attgtgaagataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttacca |
521 |
Q |
| |
|
||||||||||||||| | |||||||||||| || ||||||||||| | || ||| ||| ||||||| |||||| |||| |||||||| || |
|
|
| T |
35367086 |
attgtgaagataatcgagtgcatgagctacatcaagagcaatgtcaactctgtgtctgaggctgagattatgatttccagac------ccttcgttatca |
35366993 |
T |
|
| Q |
522 |
tgcaacaggttttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattt |
621 |
Q |
| |
|
|||| || ||||||||| | || |||||||||||||||||||||| ||||| || |||||||| |||||||||| |||||||||||||||||||| | |
|
|
| T |
35366992 |
tgcagaagcttttctagacttcccttaggcatgaactcaaaaacaatagccttgaactcttcacccttataatcaatgcttgaacaacaagttaggatct |
35366893 |
T |
|
| Q |
622 |
tgacaagattacggtgcttcatctttccta |
651 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
|
|
| T |
35366892 |
tgacaagatttcggtgcttcatctttccta |
35366863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 493 - 690
Target Start/End: Complemental strand, 35370408 - 35370208
Alignment:
| Q |
493 |
gatttctagactcatgatcttcgttaccatgcaacaggttttctagattcccactaggcatgaactcaaaaacaatggccttaaaa-tcttcaccattat |
591 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||| | ||||| | |||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
35370408 |
gatttctagactcatgttcttcgttaccatgcaacatgttttctaaactcccattgggcatgaactcaaaaacaatagccttggaactcttcaccattat |
35370309 |
T |
|
| Q |
592 |
aatcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgc--attccaccatgaaactctctgcttctcca |
689 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||| |||| ||||| |
|
|
| T |
35370308 |
aatcaacacttgagcaacacgttaggattttgacaagattacggtgcctcatctttcctaaagcattgcatattccgcaatgaaactctttgctgctcca |
35370209 |
T |
|
| Q |
690 |
c |
690 |
Q |
| |
|
| |
|
|
| T |
35370208 |
c |
35370208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 233 - 618
Target Start/End: Complemental strand, 35437428 - 35437049
Alignment:
| Q |
233 |
tttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaacctagctacg |
332 |
Q |
| |
|
|||||| || |||| ||||||||| ||||||| ||||| | ||| ||||||||| |||||| ||| ||||||| |||| |||||||| |||| |
|
|
| T |
35437428 |
tttacctgggggaacatatcctatggttccttgaattgcagctgaactaacttgatctttactggaactccctgtagccccattaaggaaccttgctaac |
35437329 |
T |
|
| Q |
333 |
ccaaagtctcctaagtgggtcacaccgtcatcatcaagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagat |
432 |
Q |
| |
|
||||| |||||||||| | | | |||||| || ||||||||||| ||||| |||| |||||| ||||||||| ||| | | || || |||||||| |
|
|
| T |
35437328 |
ccaaaatctcctaagtaagcaataatgtcatcgtcgagaagaacattacttggcttaatatcacagtgaactacagcttcatgggaattatggtgaagat |
35437229 |
T |
|
| Q |
433 |
aatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaacaggtt |
532 |
Q |
| |
|
||||||||||||| ||||| |||||||||| |||||||||| ||| |||| ||||||||||||||| ||| ||| ||| ||||||| | |
|
|
| T |
35437228 |
aatccaatgcatgggctacatcgagagcaacacttaacctttgtctga------gatttagatttctagactcaagatgttcattattgtgcaacaagcc |
35437135 |
T |
|
| Q |
533 |
ttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttagga |
618 |
Q |
| |
|
||||||| |||| |||||||||| |||||||| || ||||| ||| |||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
35437134 |
ttctagactccccataggcatgaattcaaaaactatagccttgaaaacttcaccattataatcaatacttgaacagaaagttagga |
35437049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 375 - 478
Target Start/End: Complemental strand, 35388544 - 35388441
Alignment:
| Q |
375 |
acattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtctaaccttt |
474 |
Q |
| |
|
|||||| |||| |||| |||||||||||||||| ||||||| || |||||||||||||||||| | ||||||| | ||||||||| |||||||| |
|
|
| T |
35388544 |
acattgtttggcttaatatcacaatgaactacagcttgctcaaaattattgtgaagataatccaacgtgcgagctacattgagagcaatacttaaccttt |
35388445 |
T |
|
| Q |
475 |
gtgt |
478 |
Q |
| |
|
|||| |
|
|
| T |
35388444 |
gtgt |
35388441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 35367458 - 35367365
Alignment:
| Q |
18 |
catactctattcaaacaacaacaattctttagaatagaaattaaggaatggagtatttatcaaatacttttgcatattgattaaaagaaaatca |
111 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| | | |||||| | |||||||| ||||||||||| |||||| |||||| ||| |||||| |
|
|
| T |
35367458 |
catattctattcaaataacaacaattctttagcaaaataattaacggttggagtatatatcaaatactgatgcatactgattataagcaaatca |
35367365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 402
Target Start/End: Original strand, 10716904 - 10716947
Alignment:
| Q |
359 |
gtcatcatcaagaagaacattgcttggtttaacatcacaatgaa |
402 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
10716904 |
gtcatcatcaagaaggacattgcttggcttaagatcacaatgaa |
10716947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 226 - 678
Target Start/End: Original strand, 10409758 - 10410210
Alignment:
| Q |
226 |
aaagaactttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaacct |
325 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||| | | | ||| |
|
|
| T |
10409758 |
aaagaactttaccgggaggaacatatcctatagttcccttaattgtagaggaaataacttgatctttacttgaatgttctgtagctccacgaattagcct |
10409857 |
T |
|
| Q |
326 |
agctacgccaaagtctcctaagtgggtcacaccgtcatcatcaagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattg |
425 |
Q |
| |
|
||||| |||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||||| ||| |||||| || |||||||||| |||| || |
|
|
| T |
10409858 |
agctaagccaaagtctcctaagtgagctacattgtcatcatcgagaagaacattgcttggtttaacgccactatgaaccaccacttgctctgcatcaatg |
10409957 |
T |
|
| Q |
426 |
tgaagataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgca |
525 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
10409958 |
tgaagataatccaatgcatgagctacgttgagaacaatgtctaacctttgtgtgaaattgagattcagatttctagactcgtgttctttattaccatgca |
10410057 |
T |
|
| Q |
526 |
acaggttttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattttgac |
625 |
Q |
| |
|
| |||||||| | | ||||| |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| || || |
|
|
| T |
10410058 |
aaaggttttccaaactcccattaggcatgaactcaaaaacaatagccttgaaatcttcacctttataatcaacacttgaacaacaagttaggatcttaac |
10410157 |
T |
|
| Q |
626 |
aagattacggtgcttcatctttcctaaagcattgcattccaccatgaaactct |
678 |
Q |
| |
|
|||||| ||||||||||| ||||| | ||| ||||||||||||| |||||||| |
|
|
| T |
10410158 |
aagattccggtgcttcatgtttcccagagctttgcattccaccacgaaactct |
10410210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 227 - 690
Target Start/End: Original strand, 10415456 - 10415913
Alignment:
| Q |
227 |
aagaactttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaaccta |
326 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||||| ||||| |||||| | | || |||| |
|
|
| T |
10415456 |
aagagctttaccagtaggaatatatcctatagttcctttaatagtagaggaaatgacttgatctttacttgaatgctctgtggctccaagaatgagccta |
10415555 |
T |
|
| Q |
327 |
gctacgccaaagtctcctaagtgggtcacaccgtcatcatcaagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgt |
426 |
Q |
| |
|
|||| |||||||||||| ||||||| ||| ||||||| ||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
10415556 |
gctaagccaaagtctcccaagtgggctacaacgtcatcgtcaagaagaacgttgcttgacttaacatcacagtgaactacggcttgctctgtatcattgt |
10415655 |
T |
|
| Q |
427 |
gaagataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaa |
526 |
Q |
| |
|
|||||||||| | ||||||||||| || ||||| |||||||||||||||| | ||||||| || ||| |||| |||||||| | |||| |
|
|
| T |
10415656 |
gaagataatcaagtgcatgagctagatcaagagcgatgtctaacctttgtgccaggctgagattatgaattccagac------ccttcgttatcgtgcag |
10415749 |
T |
|
| Q |
527 |
caggttttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattttgaca |
626 |
Q |
| |
|
| ||||| ||| |||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10415750 |
aatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggattttgaca |
10415849 |
T |
|
| Q |
627 |
agattacggtgcttcatctttcctaaagcattgcattccaccatgaaactctctgcttctccac |
690 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
10415850 |
agattacggtgcttcatctttcctaaagcattgcattcctccatgaaactctttgctgctccac |
10415913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 222 - 651
Target Start/End: Original strand, 10420338 - 10420761
Alignment:
| Q |
222 |
atagaaagaactttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggagga |
321 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||| || |||||||| ||| ||||||||| ||||||||||| ||| | | |||| | | || |
|
|
| T |
10420338 |
atagaaagaactttaccaggaggaacatatcctatacttcccttgattgtggaagaattaacttgatctttacttgaatggtctctggttccaagaatga |
10420437 |
T |
|
| Q |
322 |
acctagctacgccaaagtctcctaagtgggtcacaccgtcatcatcaagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatc |
421 |
Q |
| |
|
|||||||| |||||||||||| ||||| | ||| |||||| || |||||||| ||||| || |||| |||||| ||||||| ||||||||||| | |
|
|
| T |
10420438 |
gcctagctaagccaaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgctcggcttaatatcacagtgaactatggcttgctctgtacc |
10420537 |
T |
|
| Q |
422 |
attgtgaagataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttacca |
521 |
Q |
| |
|
|||||||||||||| | |||||||||||| || ||||||||||| | ||||||| ||| ||||||| || ||| |||| |||| ||| | |
|
|
| T |
10420538 |
attgtgaagataattaagtgcatgagctacatcaagagcaatgtcaaccctttgtctgaggctgagattatgaattccagac------ccttctttatcg |
10420631 |
T |
|
| Q |
522 |
tgcaacaggttttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattt |
621 |
Q |
| |
|
|||| || ||||||||| |||| |||||||||||||||||||||| ||||| || |||||||| ||||||||||| |||||||||||||||||||| | |
|
|
| T |
10420632 |
tgcagaagcttttctagactccccttaggcatgaactcaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatct |
10420731 |
T |
|
| Q |
622 |
tgacaagattacggtgcttcatctttccta |
651 |
Q |
| |
|
||||||| || ||||| ||||||||||||| |
|
|
| T |
10420732 |
tgacaaggtttcggtgtttcatctttccta |
10420761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 10420159 - 10420271
Alignment:
| Q |
18 |
catactctattcaaacaacaacaattctttagaatagaaattaaggaatggagtatttatcaaatacttttgcatattgattaaaagaaaatcatttttt |
117 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||| | | |||||||| |||||||| ||||||||||| ||||| || ||| ||| |||||| || || |
|
|
| T |
10420159 |
catattctattcaaataacaacaattcattagcaaaataattaagggttggagtatatatcaaatactgacgcatactgtttataagcaaatca-ttatt |
10420257 |
T |
|
| Q |
118 |
aatagaatgagaaa |
131 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
10420258 |
attagaatgagaaa |
10420271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 39875856 - 39875900
Alignment:
| Q |
359 |
gtcatcatcaagaagaacattgcttggtttaacatcacaatgaac |
403 |
Q |
| |
|
|||||| |||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
39875856 |
gtcatcgtcaagaaggacattgcttggttttaaatcacaatgaac |
39875900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 39883979 - 39884023
Alignment:
| Q |
359 |
gtcatcatcaagaagaacattgcttggtttaacatcacaatgaac |
403 |
Q |
| |
|
|||||| |||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
39883979 |
gtcatcgtcaagaaggacattgcttggttttaaatcacaatgaac |
39884023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 39890933 - 39890977
Alignment:
| Q |
359 |
gtcatcatcaagaagaacattgcttggtttaacatcacaatgaac |
403 |
Q |
| |
|
|||||| |||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
39890933 |
gtcatcttcaagaaggacattgcttggttttaaatcacaatgaac |
39890977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 222 - 690
Target Start/End: Original strand, 29622893 - 29623354
Alignment:
| Q |
222 |
atagaaagaactttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggagga |
321 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||| ||| ||||| |||||||||| | || | ||||| | || |
|
|
| T |
29622893 |
atagaaagaactt-accaggaggaacatatcctatagttcccttaattgtggaagaagtaatttgatcattacttgaatggtttgaggatccattaatga |
29622991 |
T |
|
| Q |
322 |
acctagctacgccaaagtctcctaagtgggtcacaccgtcatcatcaagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatc |
421 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||| |||| |
|
|
| T |
29622992 |
gcctagctaatccaaagtctcccaagtgggctacaatgtcatcatcaagaagaacattgcttggcttaacatcacagtgaactacagcttgttctatatc |
29623091 |
T |
|
| Q |
422 |
attgtgaagataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttacca |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||| |||||||| | ||| ||| || |||| ||| | |
|
|
| T |
29623092 |
attgtgaagataatccaatgcatgagctacatcaagagcaatgtctatcctttgtgtgaggttgagattatggcttccaga-tc-----cttcattatcg |
29623185 |
T |
|
| Q |
522 |
tgcaacaggttttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattt |
621 |
Q |
| |
|
||||||| ||||||||| || | |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
29623186 |
tgcaacatcttttctagactcatattaggcatgaactcaaaaacaatagccttgaaatcttcacctttataatcaacacttgaacaacaagttaggatct |
29623285 |
T |
|
| Q |
622 |
tgacaagattacggtgcttcatctttcctaaagcattgcattccaccatgaaactctctgcttctccac |
690 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| || || ||||| | |||||||||| |||| |||||| |
|
|
| T |
29623286 |
tgacaagattccggtgtttcatctttcctagagatttacattctgcaatgaaactctttgctgctccac |
29623354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 2e-85; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 225 - 664
Target Start/End: Complemental strand, 30663444 - 30663012
Alignment:
| Q |
225 |
gaaagaactttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaacc |
324 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||| ||||||||| | |||||||||| |||| |||||||| | |||| |
|
|
| T |
30663444 |
gaaagaactt-accaggaggaacatatcctatagttcccttaattgtggacgaattaacttgatctacacttgaatatgctgtggctccatgaattaacc |
30663346 |
T |
|
| Q |
325 |
tagctacgccaaagtctcctaagtgggtcacaccgtcatcatcaagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcatt |
424 |
Q |
| |
|
| || | ||||||||||| ||||||| || |||||||||||||||||||||| ||||||| |||||||| ||||||||||| | ||| ||| |||| |
|
|
| T |
30663345 |
ttgccaatccaaagtctcccaagtgggctaccatgtcatcatcaagaagaacattgtttggtttcacatcacagtgaactacaacattctcagtaccatt |
30663246 |
T |
|
| Q |
425 |
gtgaagataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgc |
524 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||| | ||||||||||| ||||||| || ||| |||| ||||||||| | ||| |
|
|
| T |
30663245 |
gtgaagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagac------tcttcgttatcgtgc |
30663152 |
T |
|
| Q |
525 |
aacaggttttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattttga |
624 |
Q |
| |
|
| || ||||||||| |||| |||||||||||||||||||||| ||||| || || ||||| |||||||| || ||||||||||| || || || |||| |
|
|
| T |
30663151 |
agaagcttttctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatctacgcttgaacaacatgtaagaatcttga |
30663052 |
T |
|
| Q |
625 |
caagattacggtgcttcatctttcctaaagcattgcattc |
664 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
30663051 |
caagatttcggtgcttcatctttcccaaagctttgcattc |
30663012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 225 - 664
Target Start/End: Complemental strand, 30672124 - 30671692
Alignment:
| Q |
225 |
gaaagaactttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaacc |
324 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||| ||||||||| | |||||||||| |||| |||||||| | |||| |
|
|
| T |
30672124 |
gaaagaactt-accaggaggaacatatcctatagttcccttaattgtggacgaattaacttgatctacacttgaatatgctgtggctccatgaattaacc |
30672026 |
T |
|
| Q |
325 |
tagctacgccaaagtctcctaagtgggtcacaccgtcatcatcaagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcatt |
424 |
Q |
| |
|
| || | ||||||||||| ||||||| || |||||||||||||||||||||| ||||||| |||||||| ||||||||||| | ||| ||| |||| |
|
|
| T |
30672025 |
ttgccaatccaaagtctcccaagtgggctaccatgtcatcatcaagaagaacattgtttggtttcacatcacagtgaactacaacattctcagtaccatt |
30671926 |
T |
|
| Q |
425 |
gtgaagataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgc |
524 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||| | ||||||||||| ||||||| || ||| |||| ||||||||| | ||| |
|
|
| T |
30671925 |
gtgaagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagac------tcttcgttatcgtgc |
30671832 |
T |
|
| Q |
525 |
aacaggttttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattttga |
624 |
Q |
| |
|
| || ||||||||| |||| |||||||||||||||||||||| ||||| || || ||||| |||||||| || ||||||||||| || || || |||| |
|
|
| T |
30671831 |
agaagcttttctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatctacgcttgaacaacatgtaagaatcttga |
30671732 |
T |
|
| Q |
625 |
caagattacggtgcttcatctttcctaaagcattgcattc |
664 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
30671731 |
caagatttcggtgcttcatctttcccaaagctttgcattc |
30671692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 225 - 664
Target Start/End: Complemental strand, 30626493 - 30626061
Alignment:
| Q |
225 |
gaaagaactttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaacc |
324 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||| ||||||||| | |||||||||| |||| |||||||| | |||| |
|
|
| T |
30626493 |
gaaagaactt-accaggaggaacatatcctatagttcccttaattgtggacgaattaacttgatctacacttgaatatgctgtggctccatgaattaacc |
30626395 |
T |
|
| Q |
325 |
tagctacgccaaagtctcctaagtgggtcacaccgtcatcatcaagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcatt |
424 |
Q |
| |
|
| || | ||||||||||| ||||||| || |||||||||||||||||||||| ||||||| |||||||| ||||||||||| | ||| ||| |||| |
|
|
| T |
30626394 |
ttgccaatccaaagtctcccaagtgggctaccatgtcatcatcaagaagaacattgtttggtttcacatcacattgaactacaacattctcagtaccatt |
30626295 |
T |
|
| Q |
425 |
gtgaagataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgc |
524 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||| | ||||||||||| ||||||| || ||| |||| ||||||||| | ||| |
|
|
| T |
30626294 |
gtgaagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagac------tcttcgttatcgtgc |
30626201 |
T |
|
| Q |
525 |
aacaggttttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattttga |
624 |
Q |
| |
|
| || ||||||||| |||| |||||||||||||||||||||| ||||| || || ||||| |||||||| | ||||||||||| || || || |||| |
|
|
| T |
30626200 |
agaagcttttctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatctattcttgaacaacatgtaagaatcttga |
30626101 |
T |
|
| Q |
625 |
caagattacggtgcttcatctttcctaaagcattgcattc |
664 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
30626100 |
caagatttcggtgcttcatctttcccaaagctttgcattc |
30626061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 402
Target Start/End: Original strand, 17923367 - 17923410
Alignment:
| Q |
359 |
gtcatcatcaagaagaacattgcttggtttaacatcacaatgaa |
402 |
Q |
| |
|
||||||||||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
17923367 |
gtcatcatcaagaaggacattgcttggttttagatcacaatgaa |
17923410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 9e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 338 - 613
Target Start/End: Complemental strand, 1154056 - 1153787
Alignment:
| Q |
338 |
gtctcctaagtgggtcacaccgtcatcatcaagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatcc |
437 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||||||||||||||||||| |||| |||||| |||||| |||||||| |||||||||||||||| |||| |
|
|
| T |
1154056 |
gtctcccaagtgggctacattgtcatcatcaagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatca |
1153957 |
T |
|
| Q |
438 |
aatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaacaggttttcta |
537 |
Q |
| |
|
| ||||||||||| || ||||||| |||| ||||| ||||| |||||||| ||||| |||| |||| || ||||||||| ||||||| |
|
|
| T |
1153956 |
agtgcatgagctatatcaagagcaaaatctaccctttttgtgagcttgagattgtgattttcagac------ccttcaatatcatgcaacatcttttcta |
1153863 |
T |
|
| Q |
538 |
gattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagt |
613 |
Q |
| |
|
|| |||| |||||||||||||||||||||| ||||| ||||||||||| || |||||| |||||| |||||||| |
|
|
| T |
1153862 |
gactcccgttaggcatgaactcaaaaacaatagccttgaaatcttcacctttgcaatcaatacttgagcaacaagt |
1153787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 1154105 - 1154061
Alignment:
| Q |
227 |
aagaactttaccaggaggaatatatcctatagttcctttaattgt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1154105 |
aagaactttaccaggaggaatatatcctattgttcctttaattgt |
1154061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 226 - 352
Target Start/End: Complemental strand, 15294171 - 15294045
Alignment:
| Q |
226 |
aaagaactttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaacct |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| || ||||||||||| ||| | | |||||| | || ||| |
|
|
| T |
15294171 |
aaagaactttaccaggaggaatatatcctatagttcctttaatcttagaggcaataactttatctttacttgaatgctctatggttccatgaatgagcct |
15294072 |
T |
|
| Q |
326 |
agctacgccaaagtctcctaagtgggt |
352 |
Q |
| |
|
||| | |||||||||||| |||||||| |
|
|
| T |
15294071 |
agccaagccaaagtctcccaagtgggt |
15294045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 226 - 352
Target Start/End: Complemental strand, 15474540 - 15474414
Alignment:
| Q |
226 |
aaagaactttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaacct |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| || ||||||||||| ||| | | |||||| | || ||| |
|
|
| T |
15474540 |
aaagaactttaccaggaggaatatatcctatagttcctttaatcttagaggcaataactttatctttacttgaatgctctatggttccatgaatgagcct |
15474441 |
T |
|
| Q |
326 |
agctacgccaaagtctcctaagtgggt |
352 |
Q |
| |
|
||| | |||||||||||| |||||||| |
|
|
| T |
15474440 |
agccaagccaaagtctcccaagtgggt |
15474414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 522 - 664
Target Start/End: Complemental strand, 13564762 - 13564620
Alignment:
| Q |
522 |
tgcaacaggttttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattt |
621 |
Q |
| |
|
||||||| ||||||||| | ||| ||| |||||||||||||||||| ||||| ||||| ||||| |||| ||||| ||||||||| ||| || || | |
|
|
| T |
13564762 |
tgcaacatcttttctagactaccattagacatgaactcaaaaacaatagccttgaaatcgtcacccttattatcaatacttgaacattaaggaagaatct |
13564663 |
T |
|
| Q |
622 |
tgacaagattacggtgcttcatctttcctaaagcattgcattc |
664 |
Q |
| |
|
| ||| |||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
13564662 |
taacacgatttcggtgcttcatctttcctaaagctttgcattc |
13564620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 371 - 450
Target Start/End: Complemental strand, 13564895 - 13564816
Alignment:
| Q |
371 |
aagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagcta |
450 |
Q |
| |
|
|||||| ||||| || ||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
13564895 |
aagaacgttgctcggcttaacatcacaatgacctaaggcttgctctacatcattgtgaagataatccaatgcataagcta |
13564816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 402
Target Start/End: Complemental strand, 12932524 - 12932481
Alignment:
| Q |
359 |
gtcatcatcaagaagaacattgcttggtttaacatcacaatgaa |
402 |
Q |
| |
|
||||||||||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
12932524 |
gtcatcatcaagaaggacattgcttggttttagatcacaatgaa |
12932481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 402
Target Start/End: Complemental strand, 12948889 - 12948846
Alignment:
| Q |
359 |
gtcatcatcaagaagaacattgcttggtttaacatcacaatgaa |
402 |
Q |
| |
|
||||||||||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
12948889 |
gtcatcatcaagaaggacattgcttggttttagatcacaatgaa |
12948846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 400
Target Start/End: Complemental strand, 12907435 - 12907394
Alignment:
| Q |
359 |
gtcatcatcaagaagaacattgcttggtttaacatcacaatg |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||| | ||||||||| |
|
|
| T |
12907435 |
gtcatcatcaagaaggacattgcttggttttagatcacaatg |
12907394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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