View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10034_high_7 (Length: 285)
Name: NF10034_high_7
Description: NF10034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10034_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 3014852 - 3015100
Alignment:
| Q |
20 |
agagagtatcaaccttgataaattctttgaggatgttgagaatgtgaaagaagacatgaggcttgtcgaaaagctttatagaaaattacaagaggcaaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3014852 |
agagagtatcaaccttgataaattctttgaggatgttgagaatgtgaaagaagacatgaggcttgtcgaaaagctttatagaaaattacaagaggcaaat |
3014951 |
T |
|
| Q |
120 |
gaagaaagcaaaattgtccacaatgctaaaacaatgaaagatcttagagcaaggatggataaagatgttgaacaggttctcaaaagagtcaaaatcatta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3014952 |
gaagaaagcaaaattgtccacaatgctaaaacaatgaaagatcttagagcaaggatggataaagatgttgaacaggttctcaaaagagtcaaaatcatta |
3015051 |
T |
|
| Q |
220 |
agggtaagcttgaagcattagaacgttcgaatgccgcgaatagaaacat |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3015052 |
agggtaagcttgaagcattagaacgttcgaatgccgcgaatagaaacat |
3015100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 96 - 268
Target Start/End: Complemental strand, 35956209 - 35956037
Alignment:
| Q |
96 |
tatagaaaattacaagaggcaaatgaagaaagcaaaattgtccacaatgctaaaacaatgaaagatcttagagcaaggatggataaagatgttgaacagg |
195 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||| |||| || |||||||||||||| |||||||| ||| ||||| | ||||| |||||||||||||| | |
|
|
| T |
35956209 |
tataggaaattgaaagaggctaatgaagaaagtaaaaccgtgcacaatgctaaaaccatgaaagaacttcgagcacgaatggacaaagatgttgaacaag |
35956110 |
T |
|
| Q |
196 |
ttctcaaaagagtcaaaatcattaagggtaagcttgaagcattagaacgttcgaatgccgcgaatagaaacat |
268 |
Q |
| |
|
| || ||| | |||||||| ||||| || || || |||||||| || ||||| ||||| || ||||||||||| |
|
|
| T |
35956109 |
tccttaaacgtgtcaaaattattaaaggaaaactcgaagcattggatcgttcaaatgcagctaatagaaacat |
35956037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University