View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10034_low_11 (Length: 235)
Name: NF10034_low_11
Description: NF10034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10034_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 24 - 216
Target Start/End: Original strand, 37147692 - 37147884
Alignment:
| Q |
24 |
ataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaatcaatgttgaactcttaattaagagaaatcaatagcg |
123 |
Q |
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| T |
37147692 |
ataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaatcaatgttgaactcttaattaagagaaattaatagcg |
37147791 |
T |
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| Q |
124 |
attatcaatccattacgaaaaccatagcctgaagctctgtattctctaatgttcgggtctggctattacttttttggttacatgttcaggtct |
216 |
Q |
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| T |
37147792 |
attatcaatccattacgaaaaccatagcctgaagctctgtattctctaatgttcgggtctggctattatttttatagttacatgttcaggtct |
37147884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 7894551 - 7894431
Alignment:
| Q |
24 |
ataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaatcaatgttgaactcttaattaagagaaatcaatagcg |
123 |
Q |
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| T |
7894551 |
ataaattacaataaatgtttgttggatgaaattgaaaacgaaattgtgaattaattaattaaatcaaagttgaactcttaattaagggaaatcaatagcg |
7894452 |
T |
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| Q |
124 |
attatcaatccattacgaaaa |
144 |
Q |
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| T |
7894451 |
attatcagtcgaatacgaaaa |
7894431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 35718200 - 35718141
Alignment:
| Q |
26 |
aaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaa |
85 |
Q |
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| T |
35718200 |
aaattacaaagaatgtttgttggacaaagttgaaaacgacattgtaaattaattaattaa |
35718141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 35411100 - 35411163
Alignment:
| Q |
24 |
ataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaat |
87 |
Q |
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||||||| ||| | |||||||||||||||| || ||||| |||||||||||||||||||||||| |
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| T |
35411100 |
ataaatttcaatgaatgtttgttggacgaaattcaaaacgaaattgtgaattaattaattaaat |
35411163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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