View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10034_low_3 (Length: 624)
Name: NF10034_low_3
Description: NF10034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10034_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 7 - 605
Target Start/End: Complemental strand, 42975663 - 42975062
Alignment:
| Q |
7 |
gaagcagagacaatgacggagctaacataaattttacgagggggccaattggccaaatataaagaagaatgaataaactacatctaaaaactaatatatt |
106 |
Q |
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| T |
42975663 |
gaagcacagacaatgatggagctaacataaattttacgagggggccaattggccaaatataaagaagaatgaataaactacatctaaaaactaatatatt |
42975564 |
T |
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| Q |
107 |
aaatttaaccgataactgggggaaaaactatacgcggaaaatttcagaagaattttttcttatatgaaatcaaaaattaaaacttcactaagataataag |
206 |
Q |
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| T |
42975563 |
aagtttaaccgataactgggggaaaaactatacgcggaaaatttcagaagaattttttcttatattaaatcgaaaattaaaacttcactaagataataag |
42975464 |
T |
|
| Q |
207 |
aaagttctttnnnnnnnn---ctatttaggaaagttgagctcgacaacgcgtctaagagtaaatttcatccatagttgactttgtaacaaacaaactaac |
303 |
Q |
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| T |
42975463 |
agagttctttaaaaaaaaaaactatttaggaaagttgagctcgacaacgcgtctaagagtaaatttcatccatagttgactttgtaacaaacaaactaac |
42975364 |
T |
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| Q |
304 |
aatgtctttttcaaggtaaacagctgatctatttgcaagaaacactatagttgctcaagagtccgaaagtgtctaaccaagaccaataaatttattaatc |
403 |
Q |
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| T |
42975363 |
aatgtctttttcaaggtaaacagctgatctatttgcaagaaacactatagttgctcaagagtccgaaagtgtctaaccaagaccaataaatttattaatc |
42975264 |
T |
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| Q |
404 |
acatgataatttttggacttttctgtttgtacttatttttagcttatagttgtttggagtagttaaatatatattaccaggctaactaaatataaaactt |
503 |
Q |
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| T |
42975263 |
acatgataatttttggacttttctgtttgtacttatttttagcttatagttgtttggagtagttaaatatatattactaggctaactaaatataaaactt |
42975164 |
T |
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| Q |
504 |
atgaatttgttttgggcagtcaaggctactcccctaagcacaaaatagacaccgacattgaaaccagacacgtcaacactagtactaactgaatgtaggc |
603 |
Q |
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| T |
42975163 |
atgaatttgttttgggcagtcaaggctactcccctaagcacaaaatagacaccgacattgacaccagacacgtcaacactagtactaactgaatgtaggc |
42975064 |
T |
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| Q |
604 |
ac |
605 |
Q |
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| T |
42975063 |
ac |
42975062 |
T |
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