View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10034_low_5 (Length: 390)
Name: NF10034_low_5
Description: NF10034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10034_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 257 - 379
Target Start/End: Complemental strand, 26869575 - 26869452
Alignment:
| Q |
257 |
gcaattgatggattattatggatatgtcatgaataaaa-ttataatatttattatgtttatgagctattccttctgaaagacgaagaatcaaaaccttaa |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||| |
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| T |
26869575 |
gcaattgatggattattatggatatgtcatgaataaaaattataatatttattatgtatatgagttattgcttctgaaagatgaagaatcaaaaccttaa |
26869476 |
T |
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| Q |
356 |
ataattttgacttcttattttcat |
379 |
Q |
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|||||||||||||||||||||||| |
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| T |
26869475 |
ataattttgacttcttattttcat |
26869452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 26875496 - 26875408
Alignment:
| Q |
88 |
agctcgtctattgattcctccttatagcagacaatatggctggttttttcccaacctttattctcacgatcattcactgttttgctact |
176 |
Q |
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| T |
26875496 |
agctcgtctattgattcctccttatagcagacaatatggttggtttttttccaacctttattctcacgatcattcactgttttgctact |
26875408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 20230353 - 20230274
Alignment:
| Q |
296 |
tataatatttattatgtttatgagctattccttctgaaagacgaagaatcaaaaccttaaataattttgacttcttattttc |
377 |
Q |
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| T |
20230353 |
tataatatttattatgcttatgagctattgcttctgaaagac--aaaatcaaaaccttaaataattttgacttctcattttc |
20230274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 259 - 369
Target Start/End: Complemental strand, 26875897 - 26875787
Alignment:
| Q |
259 |
aattgatggattattatggatatgtcatgaataaaattataatatttattatgtttatgagctattccttctgaaagacgaagaatcaaaaccttaaata |
358 |
Q |
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|||| |||||||||| ||||||||||||||| |||| |||||||||| ||| ||||||||| || | ||| |||||||| |||| |||||||||||||| |
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| T |
26875897 |
aatttatggattattgtggatatgtcatgaaaaaaactataatattttttacgtttatgagttactgcttatgaaagacaaagatccaaaaccttaaata |
26875798 |
T |
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| Q |
359 |
attttgacttc |
369 |
Q |
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||||| ||||| |
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| T |
26875797 |
attttaacttc |
26875787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 26599259 - 26599345
Alignment:
| Q |
268 |
attattatggatatgtcatgaataaaattataatatttattatgtttatgagctattccttctgaaagacgaagaatcaaaacctta |
354 |
Q |
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|||||| ||||||||||||||| | ||||||||||||||||||| |||| || |||| |||||||||||| |||||||| |||||| |
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| T |
26599259 |
attattgtggatatgtcatgaaaacaattataatatttattatgcttattagttattgcttctgaaagacatagaatcaacacctta |
26599345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 378
Target Start/End: Original strand, 38767150 - 38767186
Alignment:
| Q |
342 |
aatcaaaaccttaaataattttgacttcttattttca |
378 |
Q |
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|||||||||||||||||||||||| |||| ||||||| |
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| T |
38767150 |
aatcaaaaccttaaataattttgatttctcattttca |
38767186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 379
Target Start/End: Complemental strand, 44910066 - 44909944
Alignment:
| Q |
257 |
gcaattgatggattattatggatatgtcatgaataaaattataatatttattatgtttatgagctattccttctgaaagacgaagaatcaaaaccttaaa |
356 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||| ||| ||||||| ||||||||||||||||| |||| ||| ||||||| || |||||||| ||||| |
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| T |
44910066 |
gcaagtgatggagcattatgtatatgtcatgaaaaaagttataatttttattatgtttatgagttattgcttgcgaaagacaaataatcaaaattttaaa |
44909967 |
T |
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| Q |
357 |
taattttgacttcttattttcat |
379 |
Q |
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|||||||||||| | |||||||| |
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| T |
44909966 |
taattttgacttttcattttcat |
44909944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 41576019 - 41576063
Alignment:
| Q |
335 |
gacgaagaatcaaaaccttaaataattttgacttcttattttcat |
379 |
Q |
| |
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||||| ||||||||| |||||||||| || ||||||||||||||| |
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| T |
41576019 |
gacgatgaatcaaaatcttaaataatgttaacttcttattttcat |
41576063 |
T |
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