View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10034_low_6 (Length: 363)
Name: NF10034_low_6
Description: NF10034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10034_low_6 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 38424042 - 38423875
Alignment:
| Q |
90 |
cccttctttttcgatcttgatgcaatgctcattttatttaaattgaaagattgattttgatacggtgcaaatcaaattattgactttgatattctcaaca |
189 |
Q |
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| T |
38424042 |
cccttctttttcgatcttgatgcaatgctcattttatttaaattgaaagattgattttgatacggtgcaaatcaaattattgactttgacattctcaaca |
38423943 |
T |
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| Q |
190 |
ttataggtggagacataagtattctgcacacttgaatatagtcatatttattaacctctatgttgtga |
257 |
Q |
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| T |
38423942 |
ttataggtggagacataagtattctgcacacttgaatatagtcatatttattaacctctatgttgtga |
38423875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 312 - 351
Target Start/End: Complemental strand, 38423820 - 38423781
Alignment:
| Q |
312 |
ctaccaaatttaatcgatgaataacgtttatttttagtag |
351 |
Q |
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| T |
38423820 |
ctaccaaatttaatcgatgaataacgtttatttttagtag |
38423781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 32778823 - 32778782
Alignment:
| Q |
197 |
tggagacataagtattctgcacacttgaatatagtcatattt |
238 |
Q |
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| T |
32778823 |
tggagacatgagtattctggagacttgaatatagtcatattt |
32778782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 21240 - 21280
Alignment:
| Q |
198 |
ggagacataagtattctgcacacttgaatatagtcatattt |
238 |
Q |
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| T |
21240 |
ggagacatgagtattctggagacttgaatatagtcatattt |
21280 |
T |
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