View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10034_low_8 (Length: 251)
Name: NF10034_low_8
Description: NF10034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10034_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 34910225 - 34909998
Alignment:
| Q |
19 |
cttttggcttacttttctgccttttttattgttattatattttgcagttttctaattctatctgagaaccaactctcttccttcccaggatcgtcattct |
118 |
Q |
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| T |
34910225 |
cttttggcttacttttctgccttttttattgttattatattttgcagttttctaattctatctgagaaccaactctcttccttcccaggatcgtcattct |
34910126 |
T |
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| Q |
119 |
ttggtcaggtgcctgcttttggaggttttggctatacacctactcaaataagtccttttggatgctccatccaaccagcatttggaagcagcatatttgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34910125 |
ttggtcaggtgcctgcttttggaggttttggctatacacctactcaaataagtccttttggatgctccatccaaccagcatttggaagcagcatatttgg |
34910026 |
T |
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| Q |
219 |
tttaacaggcccccctgcctttgcttct |
246 |
Q |
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|||||||||||||||||| |||| |||| |
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| T |
34910025 |
tttaacaggcccccctgcttttggttct |
34909998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 28543341 - 28543574
Alignment:
| Q |
19 |
cttttggcttacttttctgccttttttattgttattat---attttgcagttttctaattctatctgagaaccaactctcttccttcccaggatcgtcat |
115 |
Q |
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| T |
28543341 |
cttttggcttagttttctcccttttttattgttattattatattttgc-gttttctaattctatttgaaaaccgactctcttccttcccaggatcatcat |
28543439 |
T |
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| Q |
116 |
tctttggtcaggtgcctgcttttggaggttttggctatacacctactcaaataagtccttttggatgctccat---------ccaaccagcatttggaag |
206 |
Q |
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| T |
28543440 |
ccttttgccaggagccttcttttggaggttttggctcgatgcctactcagataagtccttttggatgtgccatacaaccatcacaaccagtatttggaag |
28543539 |
T |
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| Q |
207 |
cagcatatttggtttaacaggcccccctgcctttg |
241 |
Q |
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| T |
28543540 |
caacatatttggtttaacaggcacccctgcttttg |
28543574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 28545575 - 28545732
Alignment:
| Q |
19 |
cttttggcttacttttctgcctttttt--attgt--tattatattttgcagttttctaattctatctgagaaccaactctcttccttcccaggatcgtca |
114 |
Q |
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|||||||||||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||| | |||||| | | |||| |||||||||| ||| |
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| T |
28545575 |
cttttggcttacgtttctgccttttttttattgtattattatattttgtagttttctaattctatctta-aaccaagtttgttccctcccaggatcatca |
28545673 |
T |
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| Q |
115 |
ttctttggtcaggtgcctgcttttggaggttttggctatacacctactcaaataagtcc |
173 |
Q |
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| T |
28545674 |
ctctttggtcaggagcctgcttttgtaggttttggctctactcctactcaaacaagtcc |
28545732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 34896433 - 34896265
Alignment:
| Q |
19 |
cttttggcttacttttctgccttttttattgttattatatt--------ttgcagttttctaattctatctgagaaccaactctcttccttcccaggatc |
110 |
Q |
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| T |
34896433 |
cttttggcttacttttctgccttttt-attgtttttatattattagattttgcagttttctaattctaactgagatccaacttttctcctttataggatc |
34896335 |
T |
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| Q |
111 |
gtcattctttggtcaggtgcctgcttttggaggttttggctatacacctactcaaataagtccttttgga |
180 |
Q |
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||| | ||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||| |||||| |
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| T |
34896334 |
atcagtgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttgga |
34896265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 180
Target Start/End: Complemental strand, 34905119 - 34904989
Alignment:
| Q |
50 |
ttattatattttgcagttttctaattctatctgagaaccaactctcttccttcccaggatcgtcattctttggtcaggtgcctgcttttggaggttttgg |
149 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||| | | ||| |||||| ||| ||||||||| ||||||||||||||||||||| |
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| T |
34905119 |
ttattagattttgcagttttctaattctaactgagaaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttgg |
34905020 |
T |
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| Q |
150 |
ctatacacctactcaaataagtccttttgga |
180 |
Q |
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|| || |||||||||| |||||| |||||| |
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| T |
34905019 |
ctctaatcctactcaaacaagtccatttgga |
34904989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 220
Target Start/End: Complemental strand, 34896213 - 34896183
Alignment:
| Q |
190 |
caaccagcatttggaagcagcatatttggtt |
220 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
34896213 |
caaccagcatttggaagcagcatatttggtt |
34896183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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