View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10035_low_2 (Length: 481)
Name: NF10035_low_2
Description: NF10035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10035_low_2 |
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| [»] chr4 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 258 - 481
Target Start/End: Original strand, 31524673 - 31524896
Alignment:
| Q |
258 |
cagacgagcgtctgacttctaggtagagtgtgtcattgttcccaacccttggagcaccgatcttcgttacttacacctattggtatgttgcgtgcttcaa |
357 |
Q |
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|||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524673 |
cagacgggcgtctgacttctaggtagattgtatcattgttcccaacccttggagcaccgatcttcgttacttacacctattggtatgttgcgtgcttcaa |
31524772 |
T |
|
| Q |
358 |
ccatatgcttccaaccccctccaattttgatgtggcgatgtggccgtttcccgaacacagtgatacaattccacttgtttccacactcatcaatcaacac |
457 |
Q |
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| T |
31524773 |
ccatacgcttccaaccccctccaattttgatgtggcgatgtggccgtttcccgaacacagtgatacaattccacttgtttccacactcatcaatcaacac |
31524872 |
T |
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| Q |
458 |
cacagaggtagtcttcttccccaa |
481 |
Q |
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|||||||| ||||||||||||||| |
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| T |
31524873 |
cacagaggcagtcttcttccccaa |
31524896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 31524430 - 31524578
Alignment:
| Q |
13 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacaacgcatcttaattcgaaatgccaaaggccaaaatgcttctttcaattcaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31524430 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacgacgcatcttaattcaaaatgccaaaggccaaaatgcttctttcaattcaaa |
31524529 |
T |
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| Q |
113 |
tgatgtcaacaactcttacaaaacaacaacttctacaattgttccactt |
161 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524530 |
tgatatcaacaactcttacaaaacaacaacttctacaattgttccactt |
31524578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 452
Target Start/End: Original strand, 26627855 - 26627891
Alignment:
| Q |
416 |
agtgatacaattccacttgtttccacactcatcaatc |
452 |
Q |
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||||||||||||||||||||||||||| ||||||||| |
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| T |
26627855 |
agtgatacaattccacttgtttccacattcatcaatc |
26627891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 265 - 481
Target Start/End: Complemental strand, 33366821 - 33366605
Alignment:
| Q |
265 |
gcgtctgacttctaggtagagtgtgtcattgttcccaacccttggagcaccgatcttcgttacttacacctattggtatgttgcgtgcttcaaccatatg |
364 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
33366821 |
gcgtctgacttctaggtagagtgtatcattgttcccaacccttggagcaccgatcttcgttacttacacctattggtatgttacgtgcttcaaccatacg |
33366722 |
T |
|
| Q |
365 |
cttccaaccccctccaattttgatgtggcgatgtggccgtttcccgaacacagtgatacaattccacttgtttccacactcatcaatcaacaccacagag |
464 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33366721 |
cttccaaccccctccaattttgatgcggcgatgtggccgtttcccgaacacagtgatacaattccacttgtttccacactcatcaatcaacaccacagag |
33366622 |
T |
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| Q |
465 |
gtagtcttcttccccaa |
481 |
Q |
| |
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| ||||||||||||||| |
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| T |
33366621 |
gcagtcttcttccccaa |
33366605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 33367070 - 33366922
Alignment:
| Q |
13 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacaacgcatcttaattcgaaatgccaaaggccaaaatgcttctttcaattcaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33367070 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacgacgcatcttaattcaaaatgccaaaggccaaaatgcttctttcaattcaaa |
33366971 |
T |
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| Q |
113 |
tgatgtcaacaactcttacaaaacaacaacttctacaattgttccactt |
161 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33366970 |
tgatatcaacaactcttacaaaacaacaacttctacaattgttccactt |
33366922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 265 - 481
Target Start/End: Original strand, 49194637 - 49194853
Alignment:
| Q |
265 |
gcgtctgacttctaggtagagtgtgtcattgttcccaacccttggagcaccgatcttcgttacttacacctattggtatgttgcgtgcttcaaccatatg |
364 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| | |
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| T |
49194637 |
gcgtctgacttctaggtagaatgtatcattgttcccaacccttggagcaccgaacttcgttacttacacctattggtatgttacgtgcttcaaacatacg |
49194736 |
T |
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| Q |
365 |
cttccaaccccctccaattttgatgtggcgatgtggccgtttcccgaacacagtgatacaattccacttgtttccacactcatcaatcaacaccacagag |
464 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49194737 |
cttccaaccccctccaattttgatgaggcgatgtggccgtttcccgaacacagtgatacaattccacttgtttccacactcatcaatcaacaccacagag |
49194836 |
T |
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| Q |
465 |
gtagtcttcttccccaa |
481 |
Q |
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| T |
49194837 |
gcagtcttcttccccaa |
49194853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 49194388 - 49194536
Alignment:
| Q |
13 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacaacgcatcttaattcgaaatgccaaaggccaaaatgcttctttcaattcaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49194388 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacgacgcatcttaattcaaaatgccaaaggccaaaatgcttctttcaattcaaa |
49194487 |
T |
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| Q |
113 |
tgatgtcaacaactcttacaaaacaacaacttctacaattgttccactt |
161 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49194488 |
tgatatcaacaactcttacaaaacaacaacttctacaattgttccactt |
49194536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 453
Target Start/End: Original strand, 39334573 - 39334610
Alignment:
| Q |
416 |
agtgatacaattccacttgtttccacactcatcaatca |
453 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
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| T |
39334573 |
agtgatacaattccacttgtttccacagtcatcaatca |
39334610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 331 - 481
Target Start/End: Complemental strand, 41437162 - 41437012
Alignment:
| Q |
331 |
cacctattggtatgttgcgtgcttcaaccatatgcttccaaccccctccaattttgatgtggcgatgtggccgtttcccgaacacagtgatacaattcca |
430 |
Q |
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||||||||| |||||||| ||||||| |||| ||||||||||||| ||||||| ||||||||||||| | |||| | ||| | ||||||||| ||||| |
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| T |
41437162 |
cacctattgaaatgttgcgcgcttcaagcatacgcttccaacccccgtcaattttaatgtggcgatgtgtctgtttactgaatatagtgatacagttcca |
41437063 |
T |
|
| Q |
431 |
cttgtttccacactcatcaatcaacaccacagaggtagtcttcttccccaa |
481 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||||||||| ||||| |
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| T |
41437062 |
tttgtttccacagtcatcaatcaacacaacggaggtagtcttcttgcccaa |
41437012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 331 - 481
Target Start/End: Original strand, 42934027 - 42934177
Alignment:
| Q |
331 |
cacctattggtatgttgcgtgcttcaaccatatgcttccaaccccctccaattttgatgtggcgatgtggccgtttcccgaacacagtgatacaattcca |
430 |
Q |
| |
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|||||||||| |||||| | ||||||| |||| ||||||||||||| |||||||| ||||||||||||| | |||| | ||| | ||||||||| ||||| |
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| T |
42934027 |
cacctattggaatgttgagcgcttcaagcatacgcttccaacccccaccaattttaatgtggcgatgtgtctgtttactgaatatagtgatacagttcca |
42934126 |
T |
|
| Q |
431 |
cttgtttccacactcatcaatcaacaccacagaggtagtcttcttccccaa |
481 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||| |||||||| ||||| |
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| T |
42934127 |
tttgtttccacagtcatcaatcaacacaacggaggtggtcttcttgcccaa |
42934177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 453
Target Start/End: Original strand, 28503430 - 28503467
Alignment:
| Q |
416 |
agtgatacaattccacttgtttccacactcatcaatca |
453 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| |
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| T |
28503430 |
agtgatacaattccacttgtttccacagtcatcaatca |
28503467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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