View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10035_low_3 (Length: 461)
Name: NF10035_low_3
Description: NF10035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10035_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 76 - 446
Target Start/End: Complemental strand, 33543817 - 33543442
Alignment:
| Q |
76 |
aaagacgacattgtaatgagcttggt-----catatcaatctatgtcaaagacccttttggttatatctcctcattcccctgtcaaagacatcttaaatt |
170 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33543817 |
aaagacgacattgtaatgagcttggttatatcatatcaatctatgtcaaagacccttttggttatatctccttattcccctgtcaaagacatcttaaatt |
33543718 |
T |
|
| Q |
171 |
tgtaaaagttttacggaatggaaaaactaactttgttagaccttaatccacaaagcttgcagttttattcagtttcaatttcataatccacattatataa |
270 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33543717 |
tgtttaagttttacggaatggaaaaactaactttgttagaccttaatccacaaagcttccagttttattcagtttcgatttcataatccacattatataa |
33543618 |
T |
|
| Q |
271 |
agcaaagtttttgttcaacaacaagtaaaaacaatcatgcatgcatggacaatctcaatcattttatccaacaagtataaaacttcaatttcattatttt |
370 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33543617 |
agcaaagtttttgtccaacaacaagtaaaaacaatcatgcatgcatggacaatctcaatcattttatccaacaagtataaaacttcaatttcattatttt |
33543518 |
T |
|
| Q |
371 |
atattgcttaatctcaatcatacaaagaaaacaaattttattctacttagtggaacctagaaactaggaacttatt |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33543517 |
atattgcttaatctcaatcatacaaagaaaacaaattttattctacttagtggaacctagaaactaggaacttatt |
33543442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 127 - 446
Target Start/End: Original strand, 33361261 - 33361583
Alignment:
| Q |
127 |
tttggttatatctcctcattcccctgtcaaagacatcttaaatttgtaaaagttttacggaatggaaaaactaactttgttagaccttaatccacaaagc |
226 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33361261 |
tttggctatatctccttattcccctgtcaaagacatcttaaatttgttaaagttttacggaatggaaaaactaactttgttagaccttaatccacaaagc |
33361360 |
T |
|
| Q |
227 |
ttgcagttttattcagtttcaatttcataatccacattatataaagcaaagtttttgttcaacaacaagtaaaaacaatcatgcatgcatggacaatctc |
326 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33361361 |
ttccagttttattcagtttcgatttcataatccacattatataaagcaaagtttttgtccaacaacaagtaaaaacaatcatgcatgcatggacaatctc |
33361460 |
T |
|
| Q |
327 |
aatcattttatccaacaagtataaaacttcaatttcattatt---ttatattgcttaatctcaatcatacaaagaaaacaaattttattctacttagtgg |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33361461 |
aatcattttatccaacaagtataaaacttcaatttcattattttattatattgcttaatctcaatcatacaaagaaaacaaattttattctacttagtgg |
33361560 |
T |
|
| Q |
424 |
aacctagaaactaggaacttatt |
446 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33361561 |
aacctagaaactaggaacttatt |
33361583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 33355728 - 33355783
Alignment:
| Q |
12 |
agagacatgaaaggtgtggagcggtggcggatgtagagtacgacaaagacaacatt |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33355728 |
agagacatgaaaggtgtggagcggtggcggatgtagagtacgacaaagacgacatt |
33355783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 33543859 - 33543812
Alignment:
| Q |
14 |
agacatgaaaggtgtggagcggtggcggatgtagagtacgacaaagac |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33543859 |
agacatgaaaggtgtggagcggtggcggatgtagagtacgacaaagac |
33543812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 33355772 - 33355836
Alignment:
| Q |
76 |
aaagacgacattgtaatgagcttggt-----catatcaatctatgtcaaagacccttttggttat |
135 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33355772 |
aaagacgacattgtaatgagcttggttatatcatatcaatctatgtcaaagacccttttggttat |
33355836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 28302671 - 28302726
Alignment:
| Q |
391 |
tacaaagaaaacaaattttattctacttagtggaacctagaaactaggaacttatt |
446 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
28302671 |
tacaaagaaaacaaatgcaattctacttggtggaacctagaaactaagaacttatt |
28302726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 446
Target Start/End: Complemental strand, 45345733 - 45345697
Alignment:
| Q |
410 |
attctacttagtggaacctagaaactaggaacttatt |
446 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45345733 |
attctacttggtggaacctagaaactaggaacttatt |
45345697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University