View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10035_low_4 (Length: 409)
Name: NF10035_low_4
Description: NF10035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10035_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 6578101 - 6577726
Alignment:
| Q |
18 |
atcatcctttgcatactataatatattgtaactatttatattttacaagtgaaaatcatgtctatatcaaaccttctaatgtttagcaactttgtataga |
117 |
Q |
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| T |
6578101 |
atcatcctttgcatactataatatattgtaactatttatattttacaagtgaaaatcatgtctatatcaaaccttctaatgtttagcaactttgtataga |
6578002 |
T |
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| Q |
118 |
ttcctggccatgtggagtatcaagcaaattacttgatttacagtaaaaagcaacatctattccttgtagctttcgaatttagtggcattacaaatgaagt |
217 |
Q |
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| T |
6578001 |
ttcctggccatgtggagtatcaagcaaattacttgatttacagtaaaaagcaacatctattccttgtagctttcgaatttagtggcattacaaatgaagt |
6577902 |
T |
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| Q |
218 |
tgtagtttatcgggaaaatactgaagtagagacagtaaacagtaaaagcagcaatgtgaaaggtatttatgtgtgaggaatacatttcttttctctttca |
317 |
Q |
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| T |
6577901 |
tgtagtttatcgggaaaatactgaagtagatacagtaaacagtaaaagcagcaatgtgaaaggtatttatgtgtgaggaatacatttcttttctctttca |
6577802 |
T |
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| Q |
318 |
accagactttgtcatgcattatgtgcaataaaataattcaactagttgtctacaggtcgagatgcagcatttattg |
393 |
Q |
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| T |
6577801 |
accagactttgtcatgcattatgtgcaataaaataattcaactagttgtctacaggtcgagatgcagcatttattg |
6577726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 112 - 285
Target Start/End: Original strand, 34243437 - 34243610
Alignment:
| Q |
112 |
tatagattcctggccatgtggagtatcaagcaaattacttgatttacagtaaaaagcaacatctattccttgtagctttcgaatttagtggcattacaaa |
211 |
Q |
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| T |
34243437 |
tatagattcctggaaatgtggagtaccgagcaaaatatttgattcacagtaaaaagcagcgcttatttcttgtagtttatgaatttagtggttctacaaa |
34243536 |
T |
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| Q |
212 |
tgaagttgtagtttatcgggaaaatactgaagtagagacagtaaacagtaaaagcagcaatgtgaaaggtattt |
285 |
Q |
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||||||||| |||| ||||||||||||| ||| |||||| ||||||||||||||||| || |||||||||| |
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| T |
34243537 |
tgaagttgtgctttactgggaaaatactgatgtacagacaggaaacagtaaaagcagcacagtaaaaggtattt |
34243610 |
T |
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