View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10035_low_5 (Length: 371)
Name: NF10035_low_5
Description: NF10035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10035_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 43878528 - 43878880
Alignment:
| Q |
1 |
aatacaacacaaaccctttataggacaattgatttttcttttggtaaccttaggaatagtgaacatctctttatatatatacaagtctaagtgaggacaa |
100 |
Q |
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| T |
43878528 |
aatacaacacaaaccctttataggacaattgatttttcttttggtaaccttaggaatagtgaacatctctttatatatatacaagtctaagtgaggacaa |
43878627 |
T |
|
| Q |
101 |
aattggagaatacacaagaaaacctctcttcaatcatcacatcagaccagaaccacaaatgcttctaagaaaaaccatttgcaagaccagatttttactt |
200 |
Q |
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| T |
43878628 |
aattggagaatacacaagaaaacctctcttcaatcatcacatcagaccagaaccacaaatgcttctaagaaaaaccatttgcaagaccagatttttactt |
43878727 |
T |
|
| Q |
201 |
nnnnnnncactcaaaaacttcaaatgtttcatctttggaaggtatcaaaaactacctagatctctttccttcaatccattcttaggtagaagtagcaata |
300 |
Q |
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| T |
43878728 |
aaaaaaacactcaaaaacttcaaatgtttcatctttggagggtatcaaaaactacctagatctctttccttcaatccattcttaggtagaagtagcaata |
43878827 |
T |
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| Q |
301 |
gtgcaagaacatacacaagtgatcaattctacaacgagttttatgatattctt |
353 |
Q |
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| T |
43878828 |
gtgcaagaacatacacaagtgatcaattctacaacgagttttatgatattctt |
43878880 |
T |
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