View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10035_low_8 (Length: 250)
Name: NF10035_low_8
Description: NF10035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10035_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 2176625 - 2176860
Alignment:
| Q |
8 |
gaaacacactaacactgcataccgtgttctacggtgtctcgaaccaaatacatttgactttttgaatattttttcttatatttcattctagagaggctat |
107 |
Q |
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| T |
2176625 |
gaaacacactaacactggataccgtgttctacggtgtctcgaaccaaatacatttgactttttgaatattttttcttatatttcattctagagaggttat |
2176724 |
T |
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| Q |
108 |
atgttggttcaagttgacagaatggtaactcggtccattgggagtgctataagctcagaagcaacatccttgaatggaagaa---ctccttctttgcatt |
204 |
Q |
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| T |
2176725 |
atgttggttcaagttgacagaatggtaactcggtccattgggagtgctataagttcagaagcaacatccttgaatggaagaactcctccttctttgcatt |
2176824 |
T |
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| Q |
205 |
taaattttgacagtaacttagctgcttcttcctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2176825 |
taaattttgacagtaacttagctgcttcttcctttg |
2176860 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 31846152 - 31846124
Alignment:
| Q |
52 |
caaatacatttgactttttgaatattttt |
80 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
31846152 |
caaatacatttgactttttgaatattttt |
31846124 |
T |
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